Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2052 ATGGGCAACTCATGCCGCGGATCTTTGAAAGGAAAACATTTTCAGGGCTACAGTCAGCCCGAAGACCATTCCAAGCGCAACATTCCTTCTGATTGCTCCAACTCAGACTATTGCCCCTCCAGCTTGAACTCCCAAAAGCCCGTAGCCACAGACAACCCAACTAAAGATATTAGTAACGGCTCTTGTACAGATCACCACAGCAATAACAGTAATCTACCCTTCCTTACTCCGCCCAAGAAAGACGCCATCATGAGGCGGGGCATTGATAACCAAGCATATTATGTGTTGGGTCATAAGACTCCCAATATTCGTGATCTATACACTCTAGGCCGTAAATTAGGGCAGGGACAATTTGGCACCACTTATCTATGCACTGAGAATTCCACAGGCATTGAATATGCATGCAAGTCCATCTCTAAGAGGAAGTTGATCTCCAAGGAAGACGTTGAGGATGTTAGGAGGGAAATTCAGATAATGCACCATTTAGCAGGTCATAAGAATATTGTTACCATCAAGGGTGCTTATGAGGATTCATTGTACGTGCATATTGTCATGGAGCTGTGTTCTGGGGGAGAGTTGTTTGATCGCATTATCCAAAGGGGCCACTACAGTGAGAGGAAGGCTGCAGAATTGACCAAAATTATTGTAGGAGTTGTTGAGGCTTGTCATTCCCTTGGGGTTATGCATAGAGATCTCAAGCCTGAAAACTTTTTATTAGTCAACAAAGATGATGATTTCTCCCTTAAAGCAATTGACTTTGGGCTTTCTGTTTTCTTCAAACCAGGTCAAATTTTCACCGATGTAGTTGGCAGCCCATATTATGTTGCTCCTGAGGTTCTCCTCAAGCGTTATGGGCCAGAAGCAGATGTATGGACAGCGGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCAGTGTTGAAGGGACATATAGATTTTGAATCAGATCCATGGCCTCTAATATCTGATAGTGCAAAAGATCTGATCCGGAAGATGCTATGTTCTCAGCCTTCAGAACGGTTAACTGCCCATGAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCTGATAGGGCGCTGGATCCTGCTGTCCTTTCTCGTCTCAAACAATTCTCTGCAATGAATAAGCTAAAGAAAATGGCTTTACGGGTAATTGCTGAAAGTCTATCGGAAGAGGAGATTGCTGGTCTGAAAGAAATGTTTAAGGCCATGGATACTGATAACAGTGGTGCAATTACTTTTGATGAACTCAAAGCTGGTTTGAGAAGATATGGATCAACCCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACCATAGATTATGGGGAGTTTGTTGCTGCAACAGTTCATCTTAACAAATTAGAGCGTGAGGAACATCTCATTGCAGCATTCCAATATTTTGACAAGGATGGAAGTGGTTATATTACAGTTGATGAGCTGCAGCAAGCTTGTATCGAACATAACATGACCGATGTTTTTCTTGAAGATATTATTAGGGAAGTGGACCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGTTGCCATGATGCAAAAAGGCAATGCTGGAATTGGAAGGAGGACAATGCGGAACAGTCTTAATTTGAGCATGAGAGATGCACCAGGTTGTACAGCAAGGACCGAAAGTGGAGAATAA 1734 0.4291 MGNSCRGSLKGKHFQGYSQPEDHSKRNIPSDCSNSDYCPSSLNSQKPVATDNPTKDISNGSCTDHHSNNSNLPFLTPPKKDAIMRRGIDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTGIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDSLYVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFTDVVGSPYYVAPEVLLKRYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFVAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACIEHNMTDVFLEDIIREVDQDNDGRIDYGEFVAMMQKGNAGIGRRTMRNSLNLSMRDAPGCTARTESGE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2052 577 SUPERFAMILY Protein kinase-like (PK-like) 89 389 IPR011009 -
Dere10g2052 577 Gene3D - 375 547 - -
Dere10g2052 577 SMART serkin_6 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g2052 577 MobiDBLite consensus disorder prediction 1 78 - -
Dere10g2052 577 Pfam EF-hand domain pair 413 473 IPR002048 GO:0005509
Dere10g2052 577 Pfam EF-hand domain pair 483 544 IPR002048 GO:0005509
Dere10g2052 577 ProSitePatterns EF-hand calcium-binding domain. 527 539 IPR018247 -
Dere10g2052 577 Gene3D Phosphorylase Kinase; domain 1 109 192 - -
Dere10g2052 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 99 539 - -
Dere10g2052 577 ProSiteProfiles EF-hand calcium-binding domain profile. 519 549 IPR002048 GO:0005509
Dere10g2052 577 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Dere10g2052 577 FunFam Calcium-dependent protein kinase 5 193 373 - -
Dere10g2052 577 FunFam Calcium-dependent protein kinase 1 109 192 - -
Dere10g2052 577 Gene3D Transferase(Phosphotransferase) domain 1 193 374 - -
Dere10g2052 577 MobiDBLite consensus disorder prediction 30 75 - -
Dere10g2052 577 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Dere10g2052 577 FunFam Calcium-dependent protein kinase 1 373 547 - -
Dere10g2052 577 SUPERFAMILY EF-hand 389 546 IPR011992 -
Dere10g2052 577 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Dere10g2052 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Dere10g2052 577 ProSiteProfiles Protein kinase domain profile. 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g2052 577 SMART efh_1 518 546 IPR002048 GO:0005509
Dere10g2052 577 SMART efh_1 412 440 IPR002048 GO:0005509
Dere10g2052 577 SMART efh_1 484 512 IPR002048 GO:0005509
Dere10g2052 577 SMART efh_1 448 476 IPR002048 GO:0005509
Dere10g2052 577 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Dere10g2052 577 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Dere10g2052 577 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Dere10g2052 577 CDD STKc_CAMK 107 364 - -
Dere10g2052 577 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Dere10g2052 577 Pfam Protein kinase domain 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2052 Dere-ChrDere10 34148191 34160064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2052 1 566 EF-hand Containing Proteins AT4G35310 83.598 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere10g2052 Pkinase 6.2e-73 CL0016