Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2046 ATGGGTCCTGTTGGAACCATACCTAACTGCAATTCTCATTCTAGTTTGGTTAACTACGGGAAGAAGTGCTATATTGAAATGGGGATTTGCTGGGGTTCTCCAGCTGACAACCCAAGCACAATCACAACTAATAACCTTAGCGCAGCTACAACGGGGACATCCCGGACTACCAGCAATACTACCACTACATCTTCTGGAAGTGGAACAAGTAGCCAGTTCTCGGCTTCTAGTGGTGTTGAAGCTTATCCAAATGGGCAGATTTTGCCTACTGCAAATTTGACGATCTTCACTTTTGCGGAATTGAAGGCTGCAACTAAGAATTTTAGACCTGATACAGTACTTGGGGAGGGAGGTTTTGGAACAGTCTTCAAGGGTTGGCTTGAGGCAACGCCAAAGAATGGAAGTAGAACAGTCATTGCCGTTAAAAAATTGAACTCCGAGAGCTTACAAGGATTTGAGGAGTGGAAGTCAGAAGTAAATTTTCTAGGACAACTTTCTCATCCTAACCTTGTTAAGCTGTTGGGATACTGTTGGGAAGAAACAGAGCTTCTTCTCGTCTATGAATTCATGCAAAGGGGCAGTTTGGAAAATCATCTATTTGGAAGGGGTTCTGCTGTTCAACCACTTCCCTGGGACATTAGGCTTAAAATTGCAATTGGAGCAGCTCGTGGCCTGGCATTCTTACACACATCTGAGAAATTAATTTATCGTGATTTCAAGGCCTCCAATATATTGCTCGACGGGTCCTATACTGCAAAGATTTCAGACTTTGGCTTGGCAAAATTGGCCCCTTCTGCAAGTCGGTCCCATGTAACAACTAGGGTGATGGGCACAAATGGTTATGCAGCTCCTGAGTATGTGGCAACGGGGCATCTGTATGTAAAGAGTGACGTGTATGGGTTTGGAGTTGTTTTGGTTGAGATGCTGACAGCCCTCCGGGCAGTTGATCCGAACCGTCCTAGTGGGCAACAGAATCTAGTGGACTGGGTGAAACCTTACCTACGAGATAGACGAAAATTGAAGAGCATTATGGATTCACGATTGGAGGGCAAATATCCATCCAAAGCTGCATTTCGTATAGCTCAGCTTGCTTTAAAATGTCTTGCATCAGAGCCCCAACAGCGGCCATCAATGAAGGAAGTTTTGGAGAACTTGGAGCGGATTCAAGCTGCCAATGACAAACCCGTGGAGCTTAGTTTCCGTTCTACTCATACCATGCCTCCCCATCGTCCTCGCCAACCTCTCGGCCATCGACCTCGATGA 1263 0.4584 MGPVGTIPNCNSHSSLVNYGKKCYIEMGICWGSPADNPSTITTNNLSAATTGTSRTTSNTTTTSSGSGTSSQFSASSGVEAYPNGQILPTANLTIFTFAELKAATKNFRPDTVLGEGGFGTVFKGWLEATPKNGSRTVIAVKKLNSESLQGFEEWKSEVNFLGQLSHPNLVKLLGYCWEETELLLVYEFMQRGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKLIYRDFKASNILLDGSYTAKISDFGLAKLAPSASRSHVTTRVMGTNGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTALRAVDPNRPSGQQNLVDWVKPYLRDRRKLKSIMDSRLEGKYPSKAAFRIAQLALKCLASEPQQRPSMKEVLENLERIQAANDKPVELSFRSTHTMPPHRPRQPLGHRPR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2046 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Dere10g2046 420 PANTHER OS01G0588500 PROTEIN-RELATED 63 389 - -
Dere10g2046 420 Gene3D Transferase(Phosphotransferase) domain 1 190 404 - -
Dere10g2046 420 Gene3D Phosphorylase Kinase; domain 1 85 189 - -
Dere10g2046 420 Pfam Protein tyrosine and serine/threonine kinase 112 385 IPR001245 GO:0004672|GO:0006468
Dere10g2046 420 SUPERFAMILY Protein kinase-like (PK-like) 84 385 IPR011009 -
Dere10g2046 420 MobiDBLite consensus disorder prediction 42 75 - -
Dere10g2046 420 FunFam Serine/threonine-protein kinase BIK1 75 189 - -
Dere10g2046 420 MobiDBLite consensus disorder prediction 393 420 - -
Dere10g2046 420 ProSiteProfiles Protein kinase domain profile. 108 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g2046 420 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 190 397 - -
Dere10g2046 420 CDD STKc_IRAK 114 388 - -
Dere10g2046 420 ProSitePatterns Protein kinases ATP-binding region signature. 114 143 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2046 Dere-ChrDere10 34092904 34097450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2046 91 389 Receptor kinase-like Gene Family AT4G02010 50.165 1.67e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere10g2046 PK_Tyr_Ser-Thr 2.7e-48 CL0016