Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2043 ATGGCAAACTCAGATTCCGACTGTGCTTGGAGTGGCGCTCACTCTCAGAAGCCGAAGCATTGTCGAAAGAAGCGAAAGACCAAATTGATGACAATCATGGACGATAACATTGCCTTGAAGCCGCCCAAGCAGGGGAAGAAACCCGAACCAGTCGCACCGAAGATTACGCGTCCCTGTAGCGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCTCTGTTTGGGCACATGCGTTGCCATCCTGAACGTGAATGGCGTGGGATTAATCCACCCCCGAATCTCCGGCGACAGAACGATAAACAAGTATGGATGACGGAGGAGGACCATGAGGTCGCTGAATGCCTGCTGTTGCTTGCCAATGGAACCCCCACCGCCACTCATCAGGAATCAGAAACTTGTGCCCCAGAGGGTGCCAGTCCCTCTGGTTCGAATACCCGCTTCGAGTGCTCCAGTTGCAACAGGGTATTCGGATCGGGTCAGGCCTTGGGAGGGCATAGGGCTAGTCACAAGAATGTGAAGGGTTGTTTTGGGATAACGAGGAGCGATGGCGACTGGGAGGAGCACATTCATAAGTGCGGGGGAGATGAGATGGTACTAGGACTAGGAGGGCACAAGTGTAGCATATGCCTCAGGGTGTTCTCCAGTGGTCAAGCACTTGGTGGGCACAAGAGGTGTCACTGGGAGAAAGGGGACAACTTCAGCGACCCTTCATCGTCCATCACTAATCAACCAAAGCAAGCATGTGGATGTGATGTCGACTTGAATTTCCCTCCCCCTTATGAACACCGGTACTCGCCCCTCACTCTGGATTTGAGGTTGGGACTTTAA 825 0.5321 MANSDSDCAWSGAHSQKPKHCRKKRKTKLMTIMDDNIALKPPKQGKKPEPVAPKITRPCSECGKKFWSWKALFGHMRCHPEREWRGINPPPNLRRQNDKQVWMTEEDHEVAECLLLLANGTPTATHQESETCAPEGASPSGSNTRFECSSCNRVFGSGQALGGHRASHKNVKGCFGITRSDGDWEEHIHKCGGDEMVLGLGGHKCSICLRVFSSGQALGGHKRCHWEKGDNFSDPSSSITNQPKQACGCDVDLNFPPPYEHRYSPLTLDLRLGL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2043 274 MobiDBLite consensus disorder prediction 1 26 - -
Dere10g2043 274 Gene3D Classic Zinc Finger 143 225 - -
Dere10g2043 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 225 IPR013087 -
Dere10g2043 274 SMART c2h2final6 203 225 IPR013087 -
Dere10g2043 274 SMART c2h2final6 146 168 IPR013087 -
Dere10g2043 274 SMART c2h2final6 57 79 IPR013087 -
Dere10g2043 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Dere10g2043 274 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Dere10g2043 274 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 36 274 - -
Dere10g2043 274 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Dere10g2043 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Dere10g2043 274 SUPERFAMILY beta-beta-alpha zinc fingers 58 168 IPR036236 -
Dere10g2043 274 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Dere10g2043 274 Pfam C2H2-type zinc finger 58 81 - -
Dere10g2043 274 Pfam C2H2-type zinc finger 145 169 - -
Dere10g2043 274 Pfam C2H2-type zinc finger 203 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2043 Dere-ChrDere10 34048331 34049155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2043 3 274 C2H2 Transcription Factor Family AT4G35280 48.110 1.65e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere10g2043 zf-C2H2_6 5.4e-12 CL0361