Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2027 ATGGCTTTCTTCCTATGCTTTATCTTCCTTCTCGTTTCATCTGCTACTGCTTGTGATCGCTGCGTCCACCAAACCAAGGCTGCCTATTTCTCTACAGATTCTGCTCTTACGTCTGGGGCATGTGGGTATGGCTCCTTAGCGTTGGAATTAAGTAGAGACCTTGCAGCTGGTGTGCCTTCCTTGTACAAAAATGGAGCCGGTTGTGGTGCGTGCTTTCAGATAAGATGCAAGAACCCAAGTCTATGCACCAAATCAGGTAGCAGAATGGTTTTGACTGATCTCAATACCCATAACGAAACTGATTTTGTGCTCAGCAATAGTGCCTTCACGGCCATGGCTCAGAAGGGTAGGGGTCAAGAACTTTTGAAGCTTGGAATCGTGGACGTTGAATATAAGAGAGTTCCGTGTGAGTATAAAAGCAAGAATTTGGCGGTCCGAGTGGAAGAATCAAGCAAGAATCCAGATTACTTGGCGATTAAATTTTTGTATGAAGGTGGTCAAACAGAGATAGTAGCCGTTGATGTTGCCCAGATTGGATCTTCAAACTGGAGTTTCATGAGCAGGAACTATGGGGCAGTATGGGACACAAGTAGGGTTCCACGAGGTGCATTGCAAATGAGGATAGTGGTAACATCAGGGTATGATGGGAAATGGATTTGGGCAAAGAAGGTGTTACCCGCTGATTGGAAAGCTGGAGTTGTATATGACTCTGGTGTTCAGATAACTGACATTGCACTAGAGGGCTGTTCCCCCTGCGATGATGGCAGCTGGTGA 774 0.4612 MAFFLCFIFLLVSSATACDRCVHQTKAAYFSTDSALTSGACGYGSLALELSRDLAAGVPSLYKNGAGCGACFQIRCKNPSLCTKSGSRMVLTDLNTHNETDFVLSNSAFTAMAQKGRGQELLKLGIVDVEYKRVPCEYKSKNLAVRVEESSKNPDYLAIKFLYEGGQTEIVAVDVAQIGSSNWSFMSRNYGAVWDTSRVPRGALQMRIVVTSGYDGKWIWAKKVLPADWKAGVVYDSGVQITDIALEGCSPCDDGSW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2027 257 SUPERFAMILY PHL pollen allergen 141 237 IPR036749 -
Dere10g2027 257 PANTHER EXPANSIN-B3 11 240 - -
Dere10g2027 257 FunFam Expansin-like A2 138 242 - -
Dere10g2027 257 Gene3D - 11 137 IPR036908 -
Dere10g2027 257 Gene3D - 138 242 IPR036749 -
Dere10g2027 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 237 IPR007117 -
Dere10g2027 257 SUPERFAMILY Barwin-like endoglucanases 6 139 IPR036908 -
Dere10g2027 257 PRINTS Expansin/Lol pI family signature 183 197 IPR007118 GO:0005576
Dere10g2027 257 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Dere10g2027 257 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576
Dere10g2027 257 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Dere10g2027 257 CDD DPBB_EXLA_N 13 138 - -
Dere10g2027 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 141 IPR007112 -
Dere10g2027 257 SMART dpbb_1 55 131 IPR007112 -
Dere10g2027 257 Pfam Expansin C-terminal domain 144 226 IPR007117 -
Dere10g2027 257 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Dere10g2027 257 PRINTS Major pollen allergen Lol pI signature 162 177 IPR005795 GO:0005576|GO:0019953
Dere10g2027 257 PRINTS Major pollen allergen Lol pI signature 213 230 IPR005795 GO:0005576|GO:0019953
Dere10g2027 257 PRINTS Major pollen allergen Lol pI signature 56 67 IPR005795 GO:0005576|GO:0019953
Dere10g2027 257 PRINTS Major pollen allergen Lol pI signature 76 86 IPR005795 GO:0005576|GO:0019953
Dere10g2027 257 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Dere10g2027 257 Pfam Lytic transglycolase 55 131 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2027 Dere-ChrDere10 33912523 33913791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2027 15 257 Expansin Gene Family AT4G38400 63.415 7.63e-108 310