Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2023 ATGATTAGTACCAAGAAAATCATCCAAATGGGTAGGAAGTGGCAGAAACAGGCCATGAAAAGAAGGAAGAGGATCCCATGGCCAACAACAACATCAACTCCTCCAGACAAATACTCGAGGGTACGAGGTTGTAGAGCAAAGAAGGGTCACTTTGTAGTATACAGCACCGATGGGAGGCGCTTTGTGCTTCCCTTGCTGTATCTGAACAACAAGATATTCAGAGAGATGCTCAAGCTGGCAGAAGATGAATTTGGGCTGTCTACCAATGTGCCTCTTACGTTGCCTTTTGAAGCCACTGTGATTGAGTACGTTTCGCTGTCTTTGTGTTCTCTCATCGTGATGAAGGTGATGCCATGCTTTTGGTTTGTACTAGTGCTGTTGAGGGTGGTTGCTGGAGAGGATCCATATAGATACTTCGACTGGACCATCACCTACGGCGACATCTATCCTCTTGGACTTAAACAACAGGGTATTCTTATCAATGGGCAATTTCCAGGTCCCGATCTCTACTCTGTTACCAATGACAACTTGATCATTAATGTTCACAACAACTTGCCTGAACCCTTTCTTCTTTCATGGAATGGTATTCAGCAAAGAAGAAATTCTTATCAAGACGGAGTTTATGGAACCACATGCCCGATCCCTCCTGGCAAGAACTTCACCTACAGACTTCAAGTCAAAGATCAAATTGGAAGCTTTTTCTATTTCCCTTCTCTTGCTTTCCACAAGGCTGCTGGTGGCTTTGGTGCCATCAAAATCCTCAGCAGGCCCAGAATTCCTGTCCCCTTCCCTGACCCTTCTGGTGATTTCACTGTTCTTATTGGAGATTGGTACAACATCAATCATAAGACTCTGAAGGCCGTTCTAGATCGCGGCCACAGGCTTCCTTTCCCTCGAGCTCTTCTTATCAATGGTCGTGCAAATGCTACATCTTTCACAGTTGAACAAGGCAAGACTTATAGGCTTAGAATATCAAATGTGGGGCTTCAAAACACACTCAACTTCAGAATTCAAGGGCACAACATGAAACTGGCGGAAGTTGAGGGAACTCACACTATGCAGACAACATATTCCTCAATAGATGTGCATGTTGGACAATCTTATTCGGTGCTCCTCACAGCTGATCAGGAACCTCAAGATTATTATATTGCAGTGTCCACTCGTTTCACTAACAGAGTTCTCACTGGCACCGCCATCCTTCACTATAGCAACTCCCAGCGATCCGTCTCTGGTCCAATTCCTGGTGGACCCACCACCCAGATCGATTGGTCTCTTGAGCAAGCTCGTTCAATCAGGACTAACCTGACCGCGAGTGGACCACGGCCAAATCCACAGGGCTCTTATCACTATGGTCTTGTAAACATAAGCAGAACAATTATACTGGAGAGCTCAGCAGCTCAAGTACAGGGCAAGCAGAGATATGCGGTTAACAGCGTATCCTTCGTTCCAGCTGATACTCCTCTGAAGCTAGCTGATTACTTCAAGATTGAAGGCGTTTTCCGAGTTGGAAGCATTCCAGATAGCCCTTCTCGTAAACCGATGTATCTTGATACGTCAGTCATGGGTGCCGATTTCCGAGCCTTTGTTGAGATAGTGTTTCAGAACCACGAAAGCATTGTTCAAAGCTGGCACATTGATGGATACTCTTTCTGGGTTGTAGGTATGGATGGAGGTGTGTGGACGCCTGCAAGTCGCAACCAGTACAACCTCAAAGATGCAGTTTACAGGTGCACTACACAGGTATATCCCAAGTCATGGACTGCAATCTATATGGCACTAGATAATGTGGGAATGTGGAATGTGAGAAGTGAATTTTGGGCAAGACAGTACCTTGGACAACAGTTCTATATGCGAGTGTATTCGCCAGTGGAATCCATCAGAGATGAGTACTTAATTCCAGATAATGCTCTTCTCTGTGGCAGGGCAGCCGGCAGAACAATTAGAGCACTATGA 1953 0.4567 MISTKKIIQMGRKWQKQAMKRRKRIPWPTTTSTPPDKYSRVRGCRAKKGHFVVYSTDGRRFVLPLLYLNNKIFREMLKLAEDEFGLSTNVPLTLPFEATVIEYVSLSLCSLIVMKVMPCFWFVLVLLRVVAGEDPYRYFDWTITYGDIYPLGLKQQGILINGQFPGPDLYSVTNDNLIINVHNNLPEPFLLSWNGIQQRRNSYQDGVYGTTCPIPPGKNFTYRLQVKDQIGSFFYFPSLAFHKAAGGFGAIKILSRPRIPVPFPDPSGDFTVLIGDWYNINHKTLKAVLDRGHRLPFPRALLINGRANATSFTVEQGKTYRLRISNVGLQNTLNFRIQGHNMKLAEVEGTHTMQTTYSSIDVHVGQSYSVLLTADQEPQDYYIAVSTRFTNRVLTGTAILHYSNSQRSVSGPIPGGPTTQIDWSLEQARSIRTNLTASGPRPNPQGSYHYGLVNISRTIILESSAAQVQGKQRYAVNSVSFVPADTPLKLADYFKIEGVFRVGSIPDSPSRKPMYLDTSVMGADFRAFVEIVFQNHESIVQSWHIDGYSFWVVGMDGGVWTPASRNQYNLKDAVYRCTTQVYPKSWTAIYMALDNVGMWNVRSEFWARQYLGQQFYMRVYSPVESIRDEYLIPDNALLCGRAAGRTIRAL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2023 650 CDD CuRO_3_AAO_like_1 483 604 IPR034275 GO:0005507
Dere10g2023 650 FunFam Monocopper oxidase-like protein 452 648 - -
Dere10g2023 650 Pfam Multicopper oxidase 143 256 IPR011707 GO:0005507
Dere10g2023 650 Gene3D - 451 647 IPR008972 -
Dere10g2023 650 Gene3D - 135 257 IPR008972 -
Dere10g2023 650 Pfam Auxin responsive protein 13 105 IPR003676 GO:0009733
Dere10g2023 650 SUPERFAMILY Cupredoxins 263 442 IPR008972 -
Dere10g2023 650 Gene3D - 267 440 IPR008972 -
Dere10g2023 650 FunFam Monocopper oxidase-like protein 267 440 - -
Dere10g2023 650 Pfam Multicopper oxidase 486 621 IPR011706 GO:0005507|GO:0016491
Dere10g2023 650 Pfam Multicopper oxidase 269 404 IPR001117 -
Dere10g2023 650 SUPERFAMILY Cupredoxins 129 283 IPR008972 -
Dere10g2023 650 PANTHER MULTI-COPPER OXIDASE 155 618 IPR045087 -
Dere10g2023 650 CDD CuRO_1_AAO_like_1 138 253 IPR034273 GO:0005507
Dere10g2023 650 Coils Coil 647 650 - -
Dere10g2023 650 FunFam L-ascorbate oxidase homolog 136 257 - -
Dere10g2023 650 SUPERFAMILY Cupredoxins 452 641 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2023 Dere-ChrDere10 33878921 33884277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2023 48 104 Calmodulin-binding Proteins AT5G20810 37.931 1.84e-06 47.4