Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2015 ATGGCGATGGAGGATAACGAGAGCCGTGGGAGTAGAGTGCAGGATACGTCGTCGTCGCCGGCTCAAACGCGGCAACAACGGCAGAAGCTTGAAGTGTACAATGAGGTTCTTCGTCGCCTCAAGGATTCCGACCACGAAGAGGCTATGCAGCCTGGGTTCCACCATCAGCTCTGGGCTCACTTCAACCGCCTTCCTACCCGGTATGCACTGGATGTGAATGTGGAAAGGGCTGCGGATGTTCTGATGCACAAGAGACTACTGCAGTTGGCACATGATCCTGCTAATAGGCCTGCAATTGAAGTTCGCCTGGTCCAGGTTCAAGCCATATCTGACAGAAATTTAGCTGACTCTGTCCATTCAGAAGCTCCTGGTAAAGAAGCTGGTCAAATCTCTTCTAAGAACTCAGGGAGACTGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAACCTTGAAGCCCTGGCACTTGAAGCAACTAAATGTGAAGATCTAGAGGTGGAACATTCTGTACATGCTGGTGAACTATATTTGAGGCCCATGCATGAAATCACCTTCTCAACAGAAGACAAGCCAAAGCTTCTCAGTCAGTTAACTTCTTTGCTTGCTGAGCTTGGACTGAATATTCAAGAGGCACATGTTTTTTCCACTGCTGATGGTTACTCATTAGATGTGTTTGTCGTTGATGGATGGCCCTATGAGGAAACAGAGCAGCTTAAAGCAGCTTTGGAGAAAGAAATTTCGTTGATTGAGAGGCAGGCATGGCCCATTCAACATTCAGTATCTTCTGTTAATGAGCCTGATCAAGCAGTGGTGAAACGTGAACCTGATCTTTTGACAATACCTAATGATGGGACGGATGTGTGGGAAATAGATCCTAGGCATTTGAAATTTGGAAGTAAAATTGCATCTGGATCGTATGGTGATCTATTTAAAGGTATATACTGTAGTCAGGAAGTGGCAATTAAAGTTCTCAAGGCTGAGCATGTAAATTCAGATTTGCAGAGCGAGTTTGCCCAGGAAGTCTATATCATGAGAAAGGTTCGGCACAAGAATGTTGTACAATTCATTGGAGCATGTACCAAGCCCCCATATTTGTGCATAGTAACAGAATTTATGTCCGGTGGAAGTGTGTATGATTACTTACATAAGCAAAAGGGTGTCTTTAAATTTCCATCCCTGCTGAAAGTAGCAATTGATGTTTCTAAGGGAATGAACTACTTGCACCAAAATAATATTATCCACAGGGACTTGAAGGCTGCAAATCTTTTGATGGATGAAAATTGTGTTGTCAAGGTTGCTGATTTTGGGGTTGCTAGAGTGAAAGCTCAATCAGGAGTTATGACAGCAGAAACTGGAACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCATATGATCACAAGGCTGATATATTTAGTTTTGGAGTTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCGTATGATTATTTGACCCCACTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTCTACGACCCACCATTCCCATGAACACTCATCCGAAGTTTGTTGAGCTTCTTGAGAGGTGTTGGCAGCAAGATCCAACACCAAGGCCTGATTTCTCTGAAATTATAGACATTCTGCAAAAGTTGGCTAAAGAGGTTGCAGATGGAGAGGATCCGCGCAAGGAAAAATCTGGAGGGATTTTGTCTGTCCTCAGACGGGGTCATCACTAG 1728 0.4444 MAMEDNESRGSRVQDTSSSPAQTRQQRQKLEVYNEVLRRLKDSDHEEAMQPGFHHQLWAHFNRLPTRYALDVNVERAADVLMHKRLLQLAHDPANRPAIEVRLVQVQAISDRNLADSVHSEAPGKEAGQISSKNSGRLSIHPPPAFGSSPNLEALALEATKCEDLEVEHSVHAGELYLRPMHEITFSTEDKPKLLSQLTSLLAELGLNIQEAHVFSTADGYSLDVFVVDGWPYEETEQLKAALEKEISLIERQAWPIQHSVSSVNEPDQAVVKREPDLLTIPNDGTDVWEIDPRHLKFGSKIASGSYGDLFKGIYCSQEVAIKVLKAEHVNSDLQSEFAQEVYIMRKVRHKNVVQFIGACTKPPYLCIVTEFMSGGSVYDYLHKQKGVFKFPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENCVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADIFSFGVVLWELLTGKLPYDYLTPLQAAIGVVQKGLRPTIPMNTHPKFVELLERCWQQDPTPRPDFSEIIDILQKLAKEVADGEDPRKEKSGGILSVLRRGHH 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2015 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Dere10g2015 575 ProSiteProfiles Protein kinase domain profile. 296 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g2015 575 CDD STKc_MAP3K-like 302 545 - -
Dere10g2015 575 ProSiteProfiles ACT domain profile. 183 258 IPR002912 -
Dere10g2015 575 Pfam Protein tyrosine and serine/threonine kinase 296 544 IPR001245 GO:0004672|GO:0006468
Dere10g2015 575 SUPERFAMILY Protein kinase-like (PK-like) 282 545 IPR011009 -
Dere10g2015 575 Gene3D Phosphorylase Kinase; domain 1 286 374 - -
Dere10g2015 575 Gene3D Transferase(Phosphotransferase) domain 1 375 564 - -
Dere10g2015 575 MobiDBLite consensus disorder prediction 115 146 - -
Dere10g2015 575 FunFam Serine/threonine-protein kinase isoform 1 286 374 - -
Dere10g2015 575 Coils Coil 233 253 - -
Dere10g2015 575 MobiDBLite consensus disorder prediction 553 575 - -
Dere10g2015 575 Pfam ACT domain 183 229 IPR002912 -
Dere10g2015 575 MobiDBLite consensus disorder prediction 1 29 - -
Dere10g2015 575 CDD ACT_TyrKc 181 247 - -
Dere10g2015 575 MobiDBLite consensus disorder prediction 12 29 - -
Dere10g2015 575 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 125 553 - -
Dere10g2015 575 SUPERFAMILY ACT-like 181 251 IPR045865 -
Dere10g2015 575 Gene3D - 182 253 - -
Dere10g2015 575 SMART serkin_6 296 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g2015 575 MobiDBLite consensus disorder prediction 553 568 - -
Dere10g2015 575 FunFam serine/threonine-protein kinase HT1 375 565 - -
Dere10g2015 575 PRINTS Tyrosine kinase catalytic domain signature 472 494 IPR001245 GO:0004672|GO:0006468
Dere10g2015 575 PRINTS Tyrosine kinase catalytic domain signature 453 463 IPR001245 GO:0004672|GO:0006468
Dere10g2015 575 PRINTS Tyrosine kinase catalytic domain signature 516 538 IPR001245 GO:0004672|GO:0006468
Dere10g2015 575 PRINTS Tyrosine kinase catalytic domain signature 407 425 IPR001245 GO:0004672|GO:0006468
Dere10g2015 575 PRINTS Tyrosine kinase catalytic domain signature 370 383 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2015 Dere-ChrDere10 33831867 33841763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2015 4 574 MAP Kinase Kinase Kinase AT4G35780 65.324 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Dere10g2015 PK_Tyr_Ser-Thr 8.4e-73 CL0016