Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2014 ATGGATTCCCTCAGAAAATCCTTTAAATCCTACTATTCTTACAAACATCCCAGAAAGATCTCTGCTGGGATAGACCCTGACTCCGGCCACGAACAACTTCCCATTCTCTTGGATCAAGAAACTTCCGACGATCGTAATCTTCGTCACCTTACTCCTCCATCTTCATCAATGACCTCCACTAATCCCATCCACCGCCCTGAGGTTATAGTTAAAATCGACGAGGGCGACTCAAAAGGCTCCGCAGTACCACAAGGTAACAAGATTTGGAGAGAAACTAGCATTGAGTTCTGGAACGGTGGGGATGTGAGCAAGAGTGTCAGTGATGGAAGTGCTGATGCTAATGACGAGGATAGCTTTGATTTCCGGCATCGTCGGCAGGGTTCGGATGATCCTCCCTCCATGCTCATTGGTAAGTTCTTGCACAAACAGAAAGCGTCCGGTGACATGTCGCTGGATATGGATTTGGAAATGGAGGAGCTCCAACAGGAGCATAAATTGCCTCCGGTGGAAGAGTCTCCGCAACTCAATCGGATTTCCAAAGAGCTCAAAGTCTCGTTCGAGGAACCCACTTCTAATGTGGTTGAGGTGGCGAGCGATTCCGTAAGAAGAAGGTATAGGGACTCGCCGGGTCACATAGAGTTTCACAACTCGCCACAGCGCGATCAACGTGGGTCTCCAGGTGTTGTTCAAAGTGGTAATGCTGGTGGGGGGGATGGCGAGGTGGTAAGATGTACCTCAAACGCCTCTTTTGAAAGGAATCTTTCGATGCAGAGGAAATCTGCGTTGCTGAAGGCCAAAACTAAGTCAAGATTGTTGGACCCACCGGCGGAACCTGACCGGAGGTCTGGTCGGGTGCCCAAATCAGGGCTAATGTTATCGGCGATGTTGGGGAAGATAGGGGAGGATGAGGAAGACGATCCATTTTTGGAAGAGGACGTGCCGGATGAGTTGAAGAAGACCCATTTTAGCATATGGGTTCTGCTTGAGTGGTTGAGTTTGATTTTGATTGTTGCTGCGCTAGTATGCACGCTGTGCATTCCAGTTTTGAGGAATAAGAATCTCTGGAAGCTCAAGTTATGGAAATGGGAGGTGATGGTCCTGGTTCTAATTTGTGGTCGGTTAGTTTCTGATTGGGTAATCAGAATTTTGGTGTTCTTTATCGAAAGGAGTTTCCTTTTGCGCAAGAGAGTCCTCTATTTTGTATATGGTGTGAGGAAGGCAGTTCAAAATTGTCTATGGTTGGGATTTGTTTTGATTGCTTGGCATCTATTATTTGATAAGAGGGTTGAGAGGGAGACTAGAAGCAACACCCTCCAATATGTCACCAAGGTCTTGGTCTGTTTCTTGGTAGGTACCTTGGTATGGTTGGTTAAAACTCTTGTGGTTAAGGTGCTGGCTTCTTCCTTCCATGTAAGCACATACTTCGATAGGATTCAGGAGTCACTGTTTAATCAATTTGTGATCGAAACACTGTCGGGGCCCCCTCTGATCGAAATTCAGAAGTCAGAGGAAGAGGAGCAAAAGCTTGCTGATGAGGTTCAGAAACTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGGGCAACTGCCTTCTCTACCACCAAGAGTCCTAGGGTGATAAGAAGCGGAGTGCTCCAGAAAAGCCCCCGTGTTATAAGTGGGAAGTTTTCTCGGCCACTTTCCCATAAATCAGATGATGCAATTACTATTGATCACCTGCATAAGTTGAATCCGAAAAATGTTTCTGCTTGGAATATGAAAAGGTTAATGAATATGGTCCGTCATGGCACTCTTTCTACACTGGATGAACAGATACTTGATTCGGCTCACGATGATGAAAATTCCACACAGATTAGAAGTGAAAATGAGGCAAAAGCTGCAGCAAAGAAAATATTTCAGAATGTTGCTCGGCGGGGTTGCAGGTATATATACTTGGAGGATTTGATGCGTTTTATGCGAGAAGATGAAGCTGAAAAAGCCATGAATCTCTTTGAAGGAGCGTCTGAGTCTGGGAAGATTAGCAAATCTGCTTTGAAGAACTGGGTGGTTAATGCCTTCAGAGAGAGGAGAGCACTTGCCCTGACATTGAATGATACCAAAACCGCAGTGAACAAACTTCATAGAATGCTCAATTTTCTCGTTGGCATCATTATACTGGTTATTTGGCTCTTAATATTGGAAATTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGCTTGTCTTGGTTGCGTTTATATTTGGAAATACATGCAAGACGGTATTTGAAGCAATTATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGGTGTGAAATTGATGGGGTCCAGATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTTTAAGATACGACAATCAAAAAATTATCATCCCCAACAGTGTCCTTGCTACGAAGGCCATAAATAATTACTACCGGAGTCCTGACATGGGAGATGCTATTGATTTCTTTATACATGTGTCTACCCCAGCTGAAAAGATTACACTTATGAAACACAGAATACAGAGCTTCATCGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTCATAGTCTTCAGGGATCTGGAACAGTTAAACATGATAAAAATATCCATTTGGCCAACTCATAGAATGAACCACCAAGACATGGGAGAAAGGTTCATCAGGAGATCCCTTCTGATCGAAGAGCTGCTCAAGATATTCCGGGAGCTTGACATGCAGTATCGTCTCCTTCCTCATGATATCAACATTAGAAGCATGCCTACTACTTCTGAACGCCTTCCTCCTAGTTGGGCCACAATCACGAGCTGA 2832 0.4449 MDSLRKSFKSYYSYKHPRKISAGIDPDSGHEQLPILLDQETSDDRNLRHLTPPSSSMTSTNPIHRPEVIVKIDEGDSKGSAVPQGNKIWRETSIEFWNGGDVSKSVSDGSADANDEDSFDFRHRRQGSDDPPSMLIGKFLHKQKASGDMSLDMDLEMEELQQEHKLPPVEESPQLNRISKELKVSFEEPTSNVVEVASDSVRRRYRDSPGHIEFHNSPQRDQRGSPGVVQSGNAGGGDGEVVRCTSNASFERNLSMQRKSALLKAKTKSRLLDPPAEPDRRSGRVPKSGLMLSAMLGKIGEDEEDDPFLEEDVPDELKKTHFSIWVLLEWLSLILIVAALVCTLCIPVLRNKNLWKLKLWKWEVMVLVLICGRLVSDWVIRILVFFIERSFLLRKRVLYFVYGVRKAVQNCLWLGFVLIAWHLLFDKRVERETRSNTLQYVTKVLVCFLVGTLVWLVKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLIEIQKSEEEEQKLADEVQKLQNAGVTIPPDLRATAFSTTKSPRVIRSGVLQKSPRVISGKFSRPLSHKSDDAITIDHLHKLNPKNVSAWNMKRLMNMVRHGTLSTLDEQILDSAHDDENSTQIRSENEAKAAAKKIFQNVARRGCRYIYLEDLMRFMREDEAEKAMNLFEGASESGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVGIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRYDNQKIIIPNSVLATKAINNYYRSPDMGDAIDFFIHVSTPAEKITLMKHRIQSFIDNKKEHWYPSPFIVFRDLEQLNMIKISIWPTHRMNHQDMGERFIRRSLLIEELLKIFRELDMQYRLLPHDINIRSMPTTSERLPPSWATITS 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2014 943 Coils Coil 499 519 - -
Dere10g2014 943 MobiDBLite consensus disorder prediction 100 133 - -
Dere10g2014 943 MobiDBLite consensus disorder prediction 19 61 - -
Dere10g2014 943 MobiDBLite consensus disorder prediction 270 284 - -
Dere10g2014 943 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 938 IPR016688 -
Dere10g2014 943 Pfam Mechanosensitive ion channel 710 910 IPR006685 GO:0016020|GO:0055085
Dere10g2014 943 FunFam Predicted mechanosensitive ion channel 768 817 - -
Dere10g2014 943 MobiDBLite consensus disorder prediction 208 241 - -
Dere10g2014 943 SUPERFAMILY Sm-like ribonucleoproteins 758 817 IPR010920 -
Dere10g2014 943 Gene3D - 768 817 IPR023408 -
Dere10g2014 943 MobiDBLite consensus disorder prediction 115 129 - -
Dere10g2014 943 PIRSF Memb_At2g17000 51 943 IPR016688 -
Dere10g2014 943 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2014 Dere-ChrDere10 33823138 33826984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2014 65 943 Mechanosensitive Ion Channel Family AT1G78610 58.260 0.0 961