Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1997 ATGTCTAGAGATGGAGACAAGGAGAAGGATCAGCACAAAAGCATCCGGGATAATAGGGATAGGGTGAGAGATAGAGATAGAGACAAGGAGGAGAAGTATGGTAGAGAGAGAGAGAGACAACGGGAACATGAACGTGACCGAGAAAGAGACAGGAGAGACCGAGGAAGTGAGGGTGAAAGAGAAAGGGAGAGAGATCGCTCACGGCGTAGCAGAAGTATATCTGAAAGGCATCGGAGTGATCTGGATGAAAGAGATAGAGAGAAGAGTCGTGATAGAGACTATAGAGACCGAGAGAGAAGCCGGGACAAGGATTACAGAGACAGAGAAAGGGAAAGAGAATCAAGGGAGCAAGATAAAGATAGCAGACGACATAAAGAGAAGAAGGAAGAAGCAGCAGAACCTGAGGCTGATCCTGAACGAGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGTTTGATAATGGACCGCAATTCTAGACGATCTAAGGGTGTTGGGTATATTGAGTTCTACGACGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAACCATCAGAAGCGGAGAAGAATTTGGTTCAGTCTACTACATCTGTAGCTAGCGTATCCATGGGGCTTATTGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATCTGCATTTCAGTATTACCGAAGCAGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAACTAGTCCAGCTGCCTCTGGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCCCAGAGCTTAAATGGGCAACTGGAGATTGGTGGCAGGACAATTAAGGTATCAGCTGTTGTTGATCAAACTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGAGGATGGTGGTGGCTTGTCTCTAAATGCATGTTCTCGGGCGCTTCTCATGCAGAAGTTGGATCGCAGTGGTACTGCATCAGGTATTACTGGTTCCCTTGGTAATTCTGTTGCCAACAACACAGGCCTTAACCTACCAGCGGCAGCACTTCTGGGGGCTGCGCCTGTGGGATCTCCGCTGGTTTCTCCTCTTGCTTCTGTTCCTTCAGTAGCTGGACTGCCAGGTGGAGGTCTCCAAATTCCCACAGCTACTGCTACAATGCCTACTATTGATACAATTGGTGTTCCTAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCAAAAGATGAGAAGGAACCAGATTTTGATTTGGATATTAAAGATGATGTTGAAGCAGAATGCTCTAAGTTTGGAAAGTTAAAACATATATATGTTGACAAGAATAGTGCTGGGTTTGTCTACTTACGATTTGAGAATACTCAATCTGCGATAAATGCTCAGCGTTCTCTGCATGGGAGATGGTTTGCTGGAAAGATGATCACCGCAAGCTTCATGGTACCTCAGTCATATGAGGATAAATTCCCAGACAGCAGATGGAATAACTAA 1608 0.4534 MSRDGDKEKDQHKSIRDNRDRVRDRDRDKEEKYGRERERQREHERDRERDRRDRGSEGERERERDRSRRSRSISERHRSDLDERDREKSRDRDYRDRERSRDKDYRDRERERESREQDKDSRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASVSMGLIGPYSGGARRLYVGNLHFSITEADLRRVFEAFGQVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVVDQTGMQEVGGNTGDFDDEDGGGLSLNACSRALLMQKLDRSGTASGITGSLGNSVANNTGLNLPAAALLGAAPVGSPLVSPLASVPSVAGLPGGGLQIPTATATMPTIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKDDVEAECSKFGKLKHIYVDKNSAGFVYLRFENTQSAINAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSRWNN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1997 535 MobiDBLite consensus disorder prediction 1 143 - -
Dere10g1997 535 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 338 456 IPR029123 -
Dere10g1997 535 FunFam Splicing factor CC1-like 80 228 - -
Dere10g1997 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 324 IPR000504 GO:0003723
Dere10g1997 535 FunFam Splicing factor, CC1-like protein 433 532 - -
Dere10g1997 535 Gene3D - 240 329 IPR012677 -
Dere10g1997 535 Gene3D - 72 228 IPR012677 -
Dere10g1997 535 SUPERFAMILY RNA-binding domain, RBD 240 340 IPR035979 GO:0003676
Dere10g1997 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 318 IPR000504 GO:0003723
Dere10g1997 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 212 IPR000504 GO:0003723
Dere10g1997 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 462 514 IPR000504 GO:0003723
Dere10g1997 535 SUPERFAMILY RNA-binding domain, RBD 434 518 IPR035979 GO:0003676
Dere10g1997 535 MobiDBLite consensus disorder prediction 1 142 - -
Dere10g1997 535 NCBIfam splicing factor, CC1-like family 34 530 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dere10g1997 535 CDD RRM1_RBM39_like 144 216 - -
Dere10g1997 535 SUPERFAMILY RNA-binding domain, RBD 136 224 IPR035979 GO:0003676
Dere10g1997 535 SMART rrm1_1 248 320 IPR000504 GO:0003723
Dere10g1997 535 SMART rrm1_1 439 517 IPR000504 GO:0003723
Dere10g1997 535 SMART rrm1_1 144 216 IPR000504 GO:0003723
Dere10g1997 535 SMART rrm2_1 439 517 IPR003954 GO:0003676
Dere10g1997 535 SMART rrm2_1 248 320 IPR003954 GO:0003676
Dere10g1997 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 220 IPR000504 GO:0003723
Dere10g1997 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 438 521 IPR000504 GO:0003723
Dere10g1997 535 Gene3D - 433 535 IPR012677 -
Dere10g1997 535 FunFam CC1-like, splicing factor 242 350 - -
Dere10g1997 535 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 6 531 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dere10g1997 535 CDD RRM3_RBM39_like 437 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1997 Dere-ChrDere10 33651294 33663973 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1997 144 310 Eukaryotic Initiation Factors Gene Family AT4G34110 28.994 5.19e-14 72.8