Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1963 ATGGGAAGGTCTCCTTGCTGTGAAAAAGCTCACACCAACAAAGGAGCATGGACCAAGGAGGAAGACGATCGCCTCATTGCTTATATTCGAGCTCACGGCGAGGGCTGCTGGCGATCTCTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGTCTCCGGTGGATCAACTATCTCCGTCCTGACCTCAAACGGGGCAATTTCACAGAAGAAGAAGATGAACTCATCATCAAACTCCATAGCCTCCTTGGCAACAAGTGGTCTCTGATCGCAGGGAGATTACCAGGGAGAACAGACAATGAGATAAAGAATTACTGGAATACCCATATAAGAAGGAAGCTTCTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAACGAGGCTTCCCAGAATCAACCTTTTGCATCATCTGCTTCTTCTGCTAAACAAGAAGAGAGGGAGATTGTAATCAAAGATGCGAATTCCAAACGACCCGTCGTCTTAGAAGCATGCCCTGACTTGAACCTTGAGCTAACCATCAGTCCTCCCCATCATCATCATCATCTGAATCAACCAGATCCGCCATTGTTGAAGAGTAATATTGGAATTGTTGAGGTTGGTGGGAGCACTAGTGGAAGCAGCAGTAGTAGTGGTGGTTTTAATTTCTTGGGACTGAAAAGCAGTGTTTTGGATTACAGAAGCTGTGTAACCCAAATAGAGTGGAGAGGACTGAGAAACTGA 732 0.4822 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNEASQNQPFASSASSAKQEEREIVIKDANSKRPVVLEACPDLNLELTISPPHHHHHLNQPDPPLLKSNIGIVEVGGSTSGSSSSSGGFNFLGLKSSVLDYRSCVTQIEWRGLRN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1963 243 MobiDBLite consensus disorder prediction 126 145 - -
Dere10g1963 243 CDD SANT 69 112 IPR001005 -
Dere10g1963 243 SMART sant 66 114 IPR001005 -
Dere10g1963 243 SMART sant 13 63 IPR001005 -
Dere10g1963 243 CDD SANT 16 61 IPR001005 -
Dere10g1963 243 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere10g1963 243 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere10g1963 243 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Dere10g1963 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere10g1963 243 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere10g1963 243 FunFam MYB transcription factor MYB48 69 167 - -
Dere10g1963 243 FunFam MYB-related transcription factor 13 66 - -
Dere10g1963 243 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere10g1963 243 Gene3D - 69 155 - -
Dere10g1963 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 151 - -
Dere10g1963 243 MobiDBLite consensus disorder prediction 128 145 - -
Dere10g1963 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere10g1963 243 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1963 Dere-ChrDere10 33365302 33366384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1963 1 231 MYB Transcription Factor Family AT4G38620 58.214 1.88e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere10g1963 Myb_DNA-binding 3.2e-14 CL0123