Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1958 ATGCGTAAGGGAATCTCCTTTCTTGTTCAACCGCGATGTCTCCTCCTCTTCCTTGTTCTTTCAGTTTTCCTGATTTTCGCCTTCTCTGTTTCTAAGCGGGCTGAGGAGGATGTTGAAGAGGAGCCTGAAATTACGCATAGAGTATACTTGGATGTTGATATTGATGAACAACGATTAGGTAGGATCATTATTGGATTATATGGCCAAGTTGTACCAAAAACTGTGGAAAATTTTAGGGCTTTGTGCACAGGGGAAAAGGGCAAGAGTTCCAATGGCATAAAACTTCATTATAAAGGGACACCATTTCATCGCATAATATCTGGTTTCGTGATTCAGGGTGGAGACATTGTTCATCGGGATGGCAGTGTATATGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGATAAAACATTCACATGCTGGAGTTGTTTCTATGGTGAATTCTGAACCTGATTCCAATGGCTCACAGTTTTTTATCACCACAGTGAAGGCTAGCTGGTTGGATGGAGAGCATGTTGTGTTTGGAAAGGTGGTAGAAGGCATGGATAACGTATTTGCAATAGAAGGTGGTGCTGGAACCTACAGTGGGAAACCCAGAAAGAAGGTAGTAATCTCGGACTCCGGAGAGATACCCCGCAGCCAGTGGGACGAGCAAGGGTGA 672 0.4345 MRKGISFLVQPRCLLLFLVLSVFLIFAFSVSKRAEEDVEEEPEITHRVYLDVDIDEQRLGRIIIGLYGQVVPKTVENFRALCTGEKGKSSNGIKLHYKGTPFHRIISGFVIQGGDIVHRDGSVYESIYGGTFPDENFKIKHSHAGVVSMVNSEPDSNGSQFFITTVKASWLDGEHVVFGKVVEGMDNVFAIEGGAGTYSGKPRKKVVISDSGEIPRSQWDEQG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1958 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Dere10g1958 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Dere10g1958 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Dere10g1958 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Dere10g1958 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Dere10g1958 223 FunFam Peptidyl-prolyl cis-trans isomerase 34 220 - -
Dere10g1958 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 47 214 - -
Dere10g1958 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755|GO:0006457
Dere10g1958 223 Gene3D - 34 220 IPR029000 -
Dere10g1958 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 210 IPR002130 GO:0000413|GO:0003755
Dere10g1958 223 SUPERFAMILY Cyclophilin-like 44 214 IPR029000 -
Dere10g1958 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1958 Dere-ChrDere10 33302221 33307296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1958 60 208 U-box Gene Family AT5G67530 42.000 4.12e-24 98.2