Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1949 ATGGAATCTCATATCTGGAGATCCCCTTTGTCTGTATTTCCATACGTCAAAACCAGAGAGAGAGAGCGAGGGAGAGAGAAGAAGGAGATCCAAGCGGAGATGGGTGAGAGGGTGACTGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTTGGCTTCATAACCCCGGACGATGGCGGCGAGGACCTTTTTGTCCATCAATCTTCGATCCGATCCGAAGGGTTTCGAAGTCTCGGCGACGGGGAGTCTGTGGAGTTTCGGATCGAATCTGATTCCGATGGCCGTACCAAAGCTGTTGACGTTACAGGCCCCGATGAGTCCACTGTTCAGGGAAGCCGACGCGGTGGAGGCGGTGCTGGGGGAAACAGATCCTACGGTGGTGGTGGTCGAGGCGGTGGTTACGGTGGTGGCTATGGGAGCGGCGGCGGCGGCGGTTATGGTGGTGGTCGTGGCGGAAGAGGTGGTGGAGGGTATGGCGGTGGAGGGGGTGGTGGGGGTTGTTACAAGTGTGGTGAGATGGGTCACTTAGCCAGGGACTGCTACCAGGGCGGTGGTGGCGGTGGTGGAAGGTACGGCGGCGGCGGAGGCGGCGGCGGGGGGAGCTGCTACAACTGTGGCGAGTCTGGGCATTTTGCGAGGGACTGCCCTACTGGTGCTCGTTGA 663 0.5943 MESHIWRSPLSVFPYVKTRERERGREKKEIQAEMGERVTGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSEGFRSLGDGESVEFRIESDSDGRTKAVDVTGPDESTVQGSRRGGGGAGGNRSYGGGGRGGGYGGGYGSGGGGGYGGGRGGRGGGGYGGGGGGGGCYKCGEMGHLARDCYQGGGGGGGRYGGGGGGGGGSCYNCGESGHFARDCPTGAR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1949 220 Gene3D - 29 115 IPR012340 -
Dere10g1949 220 SUPERFAMILY Retrovirus zinc finger-like domains 156 218 IPR036875 GO:0003676|GO:0008270
Dere10g1949 220 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Dere10g1949 220 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Dere10g1949 220 ProSiteProfiles Cold-shock (CSD) domain profile. 37 103 IPR002059 GO:0003676
Dere10g1949 220 Pfam 'Cold-shock' DNA-binding domain 39 103 IPR002059 GO:0003676
Dere10g1949 220 SUPERFAMILY Nucleic acid-binding proteins 34 103 IPR012340 -
Dere10g1949 220 SMART csp_8 39 104 IPR011129 GO:0003676
Dere10g1949 220 Gene3D - 163 189 - -
Dere10g1949 220 Gene3D - 197 220 - -
Dere10g1949 220 MobiDBLite consensus disorder prediction 89 127 - -
Dere10g1949 220 Pfam Zinc knuckle 166 180 IPR001878 GO:0003676|GO:0008270
Dere10g1949 220 Pfam Zinc knuckle 201 216 IPR001878 GO:0003676|GO:0008270
Dere10g1949 220 ProSiteProfiles Zinc finger CCHC-type profile. 202 216 IPR001878 GO:0003676|GO:0008270
Dere10g1949 220 ProSitePatterns Cold-shock (CSD) domain signature. 51 70 IPR019844 -
Dere10g1949 220 CDD CSP_CDS 38 103 IPR002059 GO:0003676
Dere10g1949 220 PRINTS Cold shock protein signature 40 55 IPR002059 GO:0003676
Dere10g1949 220 PRINTS Cold shock protein signature 61 70 IPR002059 GO:0003676
Dere10g1949 220 PRINTS Cold shock protein signature 76 94 IPR002059 GO:0003676
Dere10g1949 220 PANTHER COLD SHOCK DOMAIN PROTEIN 2 35 217 - -
Dere10g1949 220 ProSiteProfiles Zinc finger CCHC-type profile. 167 180 IPR001878 GO:0003676|GO:0008270
Dere10g1949 220 FunFam Cold shock protein 1 31 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1949 Dere-ChrDere10 33249557 33250947 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dere10g1949 CSD 1.3e-26 CL0021