Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1947 ATGGCTTCCTCTGCTTCTCTGTACGAGGTGCTTGGGATTTCAGCGAGCGCGAGCTGCCAAGAAATAAAGATCGCTTACAGAAAGCTCGCAAGAACATGTCACCCTGATGTGGTGGCTATGAATCAGAAGGGAAACTCAGCGAATGAGTTCATGAAGATCCATTCAGCTTATTCAACACTGTCAGACCCAGATAAGCGTGCTCGATATGACAGAGAGATTTGCAGGCATAGAAGAGCTCTTGAGTATTCATCTCTCACTTCCACAGATACGAACTCTTCCATGTCAGGTTATTATCAACGATATGCTCATGCTGCAAATAAATGGGAGACAGACCAGTGTTGGTAA 345 0.4522 MASSASLYEVLGISASASCQEIKIAYRKLARTCHPDVVAMNQKGNSANEFMKIHSAYSTLSDPDKRARYDREICRHRRALEYSSLTSTDTNSSMSGYYQRYAHAANKWETDQCW 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1947 114 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 114 - -
Dere10g1947 114 CDD DnaJ 8 62 IPR001623 -
Dere10g1947 114 Gene3D DnaJ domain 1 103 IPR036869 -
Dere10g1947 114 Pfam DnaJ domain 7 70 IPR001623 -
Dere10g1947 114 PRINTS DnaJ domain signature 8 26 IPR001623 -
Dere10g1947 114 PRINTS DnaJ domain signature 45 65 IPR001623 -
Dere10g1947 114 PRINTS DnaJ domain signature 26 41 IPR001623 -
Dere10g1947 114 SUPERFAMILY Chaperone J-domain 3 74 IPR036869 -
Dere10g1947 114 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Dere10g1947 114 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Dere10g1947 114 SMART dnaj_3 5 65 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1947 Dere-ChrDere10 33237684 33238028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1947 8 70 C2H2 Transcription Factor Family AT1G74250 47.761 6.29e-10 53.1