Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1939 ATGTCAGACACAGATGAAACTATCTCTGCAACGAAAATGGTCAACCCTAAGGTCTTCTTCGACATAACCATCGGCGGCCAGCCCGCCGGTCGGATCGTCATGGAGCTCTTTGCGGACACCACCCCGAGGACCGCCGAGAACTTCCGTGCCCTCTGCACCGGCGAGAAGGGAGTCGGCCGCAGCGGCAAGCCACTTCACTACAAGGGCTCCACCTTCCACCGTGTGATCCCCGATTTCATGTGCCAGGGCGGCGACTTCACCGCCGGTAACGGCACCGGCGGCGAGTCGATCTACGGCTCCAAGTTCGAGGACGAGAACTTCATCAAGAAGCACACCGGTCCCGGAGTGCTGTCCATGGCCAATGCCGGACCCGGAACCAACGGATCGCAGTTCTTCATCTGCACGACCAGAACGGAGTGGCTCGACGGCAAGCACGTGGTGTTCGGTCAGGTGGTGGACGGCTTGAATGTGGTGAAGGACATCGAGAAGGTGGGGTCAAGGTCTGGGAAGCCGTCGAGGCCAGTGGTGATTGCCGATTGTGGTCAACTCTCTTAG 555 0.5964 MSDTDETISATKMVNPKVFFDITIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFEDENFIKKHTGPGVLSMANAGPGTNGSQFFICTTRTEWLDGKHVVFGQVVDGLNVVKDIEKVGSRSGKPSRPVVIADCGQLS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1939 184 SUPERFAMILY Cyclophilin-like 9 183 IPR029000 -
Dere10g1939 184 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 17 183 - -
Dere10g1939 184 CDD cyclophilin_ABH_like 16 181 - -
Dere10g1939 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 IPR002130 GO:0000413|GO:0003755
Dere10g1939 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Dere10g1939 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 142 IPR002130 GO:0000413|GO:0003755
Dere10g1939 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 72 84 IPR002130 GO:0000413|GO:0003755
Dere10g1939 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Dere10g1939 184 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 181 IPR002130 GO:0000413|GO:0003755
Dere10g1939 184 FunFam Peptidyl-prolyl cis-trans isomerase 11 184 - -
Dere10g1939 184 Gene3D - 4 184 IPR029000 -
Dere10g1939 184 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 19 182 IPR002130 GO:0000413|GO:0003755
Dere10g1939 184 PIRSF Peptidylpro_ismrse 6 184 IPR024936 GO:0003755
Dere10g1939 184 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 67 84 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1939 Dere-ChrDere10 33180976 33181606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1939 30 180 U-box Gene Family AT5G67530 45.752 5.92e-30 113