Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1937 ATGCGGATTGTCGTTACGATGTTAATGCAGTTCTCTGTTTTTCCATATTCTGAATTACTTGCATATTCCAAAGGACTGAGGGTTGAGGCCATGGATTGTACAGCAGCTAGAAAAACTCAAAAGGCTGACAGAGAAAAATTAAGGAGGGATCGGCTCAATGAACAGTTTGTAGAACTGGGTAGCATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTTGCTGATACAGTCCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAGCTCAAAGATGAATATGCCACGCTGACTGAAGAATCCCAAGAGTTGACTCAGGAGAAAAATGATCTTAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAGCTTGAATAATCAGTACCAGCAACGACTCAGGACTGCCTTCCCTTGGGCTGCAATGGATCACTCTCTTATGATGGCTCCACCTTCATACCCGTATCCAGTGCCAGTGCCATTTGCAGTCCCTCCTGGTCCAATTCCCATGCATCCACCAATGCAGCCATACCCCTTCTTTGCAAATCAAAATCCTGGGGTCATCCCAAATCCCTGTTCAACATATGTTCCTTATTTAGCTCCAAATACTCTTGTTGAACATCAATCCACACAATATGTGTCCCCACCACTTCATCCAGGTAGCCATTCTCATGCGTCAGGCACACAAGATTCAAGAAACAAATCATCCAGGGAGAGCAAGGTAGAAAAAGATGAGGGTGCTAATGATGTCACCACAGACCTGGAGTTGAAGACTCCTGGATCTACTACAGATCAGGAGTTGTCATCTGGGCAAAGAAAATCCAGCCGGTCCATGAAGGAAATCAGTTGCGCTGAAGGGAGTTCGTCTGGTAGGTGCTCTTCATCTCATAGCGTACAGGATAGCTCATCAAGTAGCGTAGTTGGGAGCAGAAAAGCTGATGAATGA 954 0.4444 MRIVVTMLMQFSVFPYSELLAYSKGLRVEAMDCTAARKTQKADREKLRRDRLNEQFVELGSILDPDRPKNDKATILADTVQLLKDLTSQVSKLKDEYATLTEESQELTQEKNDLREEKASLKSDIESLNNQYQQRLRTAFPWAAMDHSLMMAPPSYPYPVPVPFAVPPGPIPMHPPMQPYPFFANQNPGVIPNPCSTYVPYLAPNTLVEHQSTQYVSPPLHPGSHSHASGTQDSRNKSSRESKVEKDEGANDVTTDLELKTPGSTTDQELSSGQRKSSRSMKEISCAEGSSSGRCSSSHSVQDSSSSSVVGSRKADE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1937 317 MobiDBLite consensus disorder prediction 214 233 - -
Dere10g1937 317 MobiDBLite consensus disorder prediction 257 317 - -
Dere10g1937 317 Pfam Helix-loop-helix DNA-binding domain 37 86 IPR011598 GO:0046983
Dere10g1937 317 CDD bHLH_AtILR3_like 41 115 - -
Dere10g1937 317 MobiDBLite consensus disorder prediction 214 317 - -
Dere10g1937 317 PANTHER TRANSCRIPTION FACTOR BHLH121 22 315 IPR044579 GO:0003700|GO:0006879
Dere10g1937 317 Gene3D - 35 119 IPR036638 GO:0046983
Dere10g1937 317 SMART finulus 42 92 IPR011598 GO:0046983
Dere10g1937 317 Coils Coil 76 138 - -
Dere10g1937 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 107 IPR036638 GO:0046983
Dere10g1937 317 Coils Coil 35 55 - -
Dere10g1937 317 MobiDBLite consensus disorder prediction 234 254 - -
Dere10g1937 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 86 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1937 Dere-ChrDere10 33163745 33166400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1937 2 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 58.065 2.99e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere10g1937 HLH 1.5e-09 No_clan