Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1898 ATGCGAACGCTTTGTGACGTTTGTGAGAACGCTGCTGCGATCCTGTTCTGCGCTGCAGACGAGGCTGCTTTGTGCCGTGCATGCGACGAAAAGGTACATACATGCAACAAGCTTGCCGGTAAACATGTGCGAGTCAGGCTGGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGTTGTGTCTGCAATGTGACATGATAGTACATGTCGGTGGTAAAAGAACCCATGAAAGATATCTTCTACTGAGGCAGAGAGCTGAGTTTCCAAGTGATAAATCTGGCAAATTAGAAGAACTAGGACTGCAACACCTTGGTCAAAATGAATTAAGGAAGGGGCAAAGTCAACCACTAATGCTAATAACAAGAGATGGTCAGCAGAACCACAGGGTCTCACCTTTTTCAATGCTAGAAAATAATGTTGATGCTCACGGAAATATGGATAAAAAATTAATTGATCTTAATGCTAGGCCACAACGGTTAAATGGACCAACCTCAAACAACCAGGAACCAGAACCGGTAATAGAGGTGTTCTTCATCAGTTGA 588 0.4405 MRTLCDVCENAAAILFCAADEAALCRACDEKVHTCNKLAGKHVRVRLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRAEFPSDKSGKLEELGLQHLGQNELRKGQSQPLMLITRDGQQNHRVSPFSMLENNVDAHGNMDKKLIDLNARPQRLNGPTSNNQEPEPVIEVFFIS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1898 195 Gene3D Classic Zinc Finger 2 95 - -
Dere10g1898 195 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Dere10g1898 195 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270
Dere10g1898 195 FunFam B-box zinc finger protein 19 2 92 - -
Dere10g1898 195 SMART bboxneu5 1 47 IPR000315 GO:0008270
Dere10g1898 195 SMART bboxneu5 51 96 IPR000315 GO:0008270
Dere10g1898 195 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere10g1898 195 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 129 - -
Dere10g1898 195 CDD Bbox1_BBX-like 56 96 - -
Dere10g1898 195 CDD Bbox1_BBX-like 4 47 - -
Dere10g1898 195 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1898 Dere-ChrDere10 32726688 32729748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1898 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 1.74e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dere10g1898 zf-B_box 3e-06 No_clan