Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1892 ATGACAAACCCTTCAGAGGATCCTCCCTCACCCTCACGGTGCATCGCGCCGCTGCTGCCGCCTGCCACCGTCGACGACATGCAAGCCGACCGGCGAGACGATGCCGATGAGGCGAATGCCCTCCAATCTCACCCTCACTGTGACATGCCCGAAGAGAATCCACCCTCTCCAATCTCTGTTCCATCTGCCTCCAGGGAACTGACAGAGGAAGCCAATGTAGCTGACATTACTGTGGAGACCAGGAAGGTGGGGGAGGTGGCAGATGAGGCTGCCATGTCAAATGAAAATGAGGAAGCAGAAAAAATTCCAGTGGGAACAGAGACAGCCGACACATATGTGTCTTGCACCCTTGGTGAGACAACTGAAGCAGTGGAAACCAGGAAGGTGGAAGAAGAAGCCAATGTAGCTGACATTGCTGAGGAGACCAAGAGAGTGGAAGAGGAATCCAATGTAGCCCACATTGCTGAGGAGATCAAGAAAGTGGAAGAGGAATCTGATGTAGCTGACATTGCTGAGGAGACCAAGAAAATGGAAGAAGATTTGGTTGTCATGTCATATCAGAATGAGGAAGCAGAGAAAGTTGAAGTGGGGACAGAGACAGCAGACACACAAGTGGCTTGTTCTCTTGGTGTGACAGCGGAAGCAGTGGAGACCAGGGAGGTGGAAGAGGAGGGAGATGAGGCTGCCAAGTCAGATGAGATTGAGGAAGCAGAGAAAGTAGCAGCAAAGATGGAGACAGCAGACGCCTCTATGGCTTGCACCCTTGGTGAGACAACTGAAGCAGACAGAGCTGGCATGGAGGAGGAAATCAGGGAGGCTGAAAATAAGGAAGAGGTAGCAGAGGAGTTGAATGTGGTTGGTACAGTGGAAGGTGTGATTGGAACAGAAGAGGATGCAGATGGGGCTGGCAGAGAGGAAGAGGCCATAGAGGCAGAAGAGATAGAGGTAGCTACTGAAGCAGATTTGATGGAAGAGGAAGTAGATGTTGCTGACACAGCAGAATATACAGAGGGTGCTGAGCTGGTAGAGGAGATGGAAGTGGCAGAGGAGCAAAGTAGAAGTGTCAGTGGTGGGAAGAGGAAGCGTGGGAGGAATTCCAAATCTGCAGGGAGAGTTCCAGTTAAAAAAAAGTTGGAAGAGGATGTTTGTTTTATTTGCTTCGATGGGGGTGAGCTTGTGCTTTGCGATCGCAGGGGATGCCCAAAGGCTTACCATCCTACATGTGTTAATCGTGATGATGCATTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCATCTGTGAGAAGAATGCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGATGCGTCAAAGATGCTGTCATCTTATGTGTTAGGGGAAAGAAAGGCTTTTGTGAGACATGCATGAGGACTGTAATGTTGATTGAACAGAATGAGCTGGGAAACAAGGACACGGGACAAGTTGATTTTGATGACAAAAACTGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGGAAAGCTATCTTTAACATATGATGAGCTTGCTCAAGCTAAAAACCCATGGAAGGGATCTGATAGCCTTCCTGCCAAACCAGAATCACCTGATGAGCTCTATGATGCTAATAATGATGGGGGATCACCTTCTGATAGCTCTTCTGAGAATGGAGAAAGGAGTAGTGTCAAGAGAAGGAAGGCCAATAAGCGGTTGAAGTCCCGTTCCAAGGAAGGGAATTCACATAGCACAATGACATTGTTTGGTGCCCAAGGGCCATCTGCAGATGACAGGTCTGAGTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGCGAAATGGTGACAAATCTGTTCTGTCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAACAAGCTTCGTGATCCTCGCCGGAAAAGTCAAATAATTTGTGATGTGAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGCCATTTTGAAATGCTAAAGCTTCTAGAATCCCATTTCCTTCTAAAGGAAGATTCCCAGGCTGAAGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAATCATTTGGAAGGTGATGGCAATACTGATTCCTTTATGAAGGCAGGAAAAGACAGGAGACGTAAAACGCGTAAAAAGGGTGATGACAGAGGACTTCAATCTAATCCTGATGATTATGCAGCTATTGATCACCATAATATTAATTTAATATATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATGCAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATTAGGATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCTGAGCCGTATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAGAGTATAAAGTGTGGACTGATAAATCGGCTGACAGTGGGTGACATTCAGGACAAAGCAATGACCCTGCAAGCAGTCAGAGTAAAAGATTGGCTAGAAGCAGAGATAGTGAGGCTAAGTCATCTCCGTGATAGAGCTAAATGTGTGGAGAAATTGCAGCTTTTGAAAACACCTGAGGAACGTCAGCGTAGATTGGAGGAAATTCCAGAAATACATGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGATCATAAACGACTAGATAACTACATGCGACCTAGAGGAACTGCATTTGATCGAAGGGGGAGAGATCTAGTTTCTCCTAGAACAGGTGGTTCTATGTCAAATGATTCATGGAGTGGAGCAAGGAACTATCCTAATACTAATCGTGAACTAAGCAGGAATTTGTCTAATAAGGGATTCTCAGTTAAAGTTGATGATGTTTCTAATGCCGTTGAGGTGTTGAATGATGTTCAAACGTTCCAGGGTAGAGATAGGGAGACACAGCCATCTAACAGCTGGGAGGGGCAAAAACTATATTCGAGCTTAGAAAGTAGTGGTAAAAATACCCAGCCTGTGGTAGTTTCTGAGAGTTTTTCTTCTACTGTGTCAGAAGCTTCTGCGGTGCCATCTCCAACTGGCATAGCACTGCCAGCTGTGAAAATTAATGAAACAGAAAAGATGTGGCATTACAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGTGCAGTTACGGAAATGGAGTAACACTGGATATTTTCCTGCTGATTTGAGAATTTGGAGACTCACTGAGGAACAAGATGACTCTATACTCTTAACTGATGCCTTAGCTGGAAACTTTTCTAAGGAGCCACCAGTGGTGGATAAAACTTTCCCAAAGGCTCAAATGGTGCATAATTTGAATTACTCAGGCTCACACTCTGGGAAGCTTCATTTGCCTGCACAACAAGATATTGAAGCTCAAGTTGGAGGAAGATCAATAATTGATCAAAATAGTGGGTCTTATAATTCACATAGTACTCTGGGTTCTATAGGCCAAACTACTGGAGGAAGTTGGAGGTTTGAAGATACGAATTCTATTGTGAGTGGGCCTTCTCCAATGACAGTTGAGATCCCCAAGATTCCTAGAAATGGGCAGGGATCTGATGCTGGTGTTAGAATTGAATCAATGAATCTTCCTTCACCTACTCCTCAGACTACCGCTTATGGGACTAAGGGGCAGGGTTTTGAAAATAAATGGTCACCAACTCCTGTGCAGTCAGCTGGCTCTCTCGTGGGTAGTCCTTTTCCTGGAGGTCATGGAGGCTTGCAGGTTGCTGGGTTTCCAGAGAATGTGGTGCAAAATGCAGAAAGTGGTTCAAGTTCACAACCTGGTAATATTTCGGCCCTTAAACCTGGTATTTCTCTTGGTCACCCTCAAGCAACAACAGTGGCACCTATTCTGGCTGATGCTTCAAGAAATATTGGCGCTGACAATAAAGCTGCAAGTATGCAAAACGTGGTTATGAGTGGCCATAATTCTCATGCTGAAGCGCAAGGGTGGGGATCTGGTTTGGTTCGGAAACCTGAAACACCTGGCTCGATTCAGCTACGAGGAGGTGAACAGCAGGCCTGGGGAGGTGTTCATTCGAGAGTAGAATCAAATAATCCTGCTACTATTCCTGCCCAACAACCACCTACCCATGGCCACTGGGGTGATGCTTCATCTGTCCAGAATTCTGCCTCATTTAACGCTGGAAATCCAATGGGGAATTTCCCCATGCCAGGCGTTCAAGACTTGAGACCACCAACTTCAAGTAATCAACCTAACATCACTGCTCCACCGCCACCTAATATGCCTTGGGGCATGGCTGTTGCAGAAAGTCAAAATACTAGTTGGGGGATAATGCCTGGAAATCCAAATCTAAATTGGGGTGGACCTCTACCCGCCAATATGAACATGAATTGGATGCCTGGCCAGGGTCCAGCACCGGGAAATGCAAATCCAGGATGGGCTGCTCCCAGTCAGGGGCCATCTCCAGTAAATCCAGCTGGTTGGGTTGCACCTGGTCAAGGCCATCCTAATGCTAATGCAGGTTGGGTTGTGCCTGGTCAAGGTCCGGCACCTGTTAGTGCTAATTCTGGTTGGCCTGCTCCGGCTGGGAATCAAGGCATGTGGGGAAATGAACAAAATCATAATGGAGACAGATTCCTTAACCAGCGGGATCGCGGTCCTCATAGTGGTGAATCAGGTTATGGTGGAGATAAACCATGGAACAGGCAGTCTTCATTTGGCGGAGGAGGCAGAGGAGGTTCTTCGGGGCCTTCTTTTGGGGGGCAGAGAGGAGTGTGCAAATTCCACGAGAGTGGACACTGCAAGAAGGGAGCTTATTGTGATTATCTGCACACCTGA 4959 0.458 MTNPSEDPPSPSRCIAPLLPPATVDDMQADRRDDADEANALQSHPHCDMPEENPPSPISVPSASRELTEEANVADITVETRKVGEVADEAAMSNENEEAEKIPVGTETADTYVSCTLGETTEAVETRKVEEEANVADIAEETKRVEEESNVAHIAEEIKKVEEESDVADIAEETKKMEEDLVVMSYQNEEAEKVEVGTETADTQVACSLGVTAEAVETREVEEEGDEAAKSDEIEEAEKVAAKMETADASMACTLGETTEADRAGMEEEIREAENKEEVAEELNVVGTVEGVIGTEEDADGAGREEEAIEAEEIEVATEADLMEEEVDVADTAEYTEGAELVEEMEVAEEQSRSVSGGKRKRGRNSKSAGRVPVKKKLEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSICEKNAYYMCYTCTFSLCKGCVKDAVILCVRGKKGFCETCMRTVMLIEQNELGNKDTGQVDFDDKNCWEYLFKDYYIDLKGKLSLTYDELAQAKNPWKGSDSLPAKPESPDELYDANNDGGSPSDSSSENGERSSVKRRKANKRLKSRSKEGNSHSTMTLFGAQGPSADDRSEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDVRLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDQQGSVVDTEVNHLEGDGNTDSFMKAGKDRRRKTRKKGDDRGLQSNPDDYAAIDHHNINLIYLRRNLVEDLLEDADKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMTLQAVRVKDWLEAEIVRLSHLRDRAKCVEKLQLLKTPEERQRRLEEIPEIHADPNMDPSYESEEDEDEMDHKRLDNYMRPRGTAFDRRGRDLVSPRTGGSMSNDSWSGARNYPNTNRELSRNLSNKGFSVKVDDVSNAVEVLNDVQTFQGRDRETQPSNSWEGQKLYSSLESSGKNTQPVVVSESFSSTVSEASAVPSPTGIALPAVKINETEKMWHYKDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRLTEEQDDSILLTDALAGNFSKEPPVVDKTFPKAQMVHNLNYSGSHSGKLHLPAQQDIEAQVGGRSIIDQNSGSYNSHSTLGSIGQTTGGSWRFEDTNSIVSGPSPMTVEIPKIPRNGQGSDAGVRIESMNLPSPTPQTTAYGTKGQGFENKWSPTPVQSAGSLVGSPFPGGHGGLQVAGFPENVVQNAESGSSSQPGNISALKPGISLGHPQATTVAPILADASRNIGADNKAASMQNVVMSGHNSHAEAQGWGSGLVRKPETPGSIQLRGGEQQAWGGVHSRVESNNPATIPAQQPPTHGHWGDASSVQNSASFNAGNPMGNFPMPGVQDLRPPTSSNQPNITAPPPPNMPWGMAVAESQNTSWGIMPGNPNLNWGGPLPANMNMNWMPGQGPAPGNANPGWAAPSQGPSPVNPAGWVAPGQGHPNANAGWVVPGQGPAPVSANSGWPAPAGNQGMWGNEQNHNGDRFLNQRDRGPHSGESGYGGDKPWNRQSSFGGGGRGGSSGPSFGGQRGVCKFHESGHCKKGAYCDYLHT 1652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1892 1652 ProSiteProfiles GYF domain profile. 1079 1133 IPR003169 GO:0005515
Dere10g1892 1652 FunFam Zinc finger CCCH domain-containing protein 19 592 686 - -
Dere10g1892 1652 CDD Bbox1 428 454 - -
Dere10g1892 1652 SMART gyf_5 1080 1135 IPR003169 GO:0005515
Dere10g1892 1652 ProSiteProfiles Zinc finger PHD-type profile. 380 446 IPR019787 -
Dere10g1892 1652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 474 IPR013083 -
Dere10g1892 1652 ProSiteProfiles SWIB/MDM2 domain profile. 598 681 IPR003121 -
Dere10g1892 1652 MobiDBLite consensus disorder prediction 962 986 - -
Dere10g1892 1652 SUPERFAMILY SWIB/MDM2 domain 604 680 IPR036885 -
Dere10g1892 1652 MobiDBLite consensus disorder prediction 698 736 - -
Dere10g1892 1652 Pfam GYF domain 1082 1122 IPR003169 GO:0005515
Dere10g1892 1652 SMART rtf1 740 850 IPR004343 GO:0003677
Dere10g1892 1652 Coils Coil 256 286 - -
Dere10g1892 1652 ProSiteProfiles Zinc finger C3H1-type profile. 1627 1652 IPR000571 GO:0046872
Dere10g1892 1652 FunFam Zinc finger CCCH domain-containing protein 19 741 870 - -
Dere10g1892 1652 CDD GYF 1079 1134 IPR003169 GO:0005515
Dere10g1892 1652 MobiDBLite consensus disorder prediction 26 41 - -
Dere10g1892 1652 FunFam Zinc finger CCCH domain-containing protein 19 1081 1138 - -
Dere10g1892 1652 MobiDBLite consensus disorder prediction 1568 1626 - -
Dere10g1892 1652 SUPERFAMILY GYF domain 1071 1132 IPR035445 -
Dere10g1892 1652 ProSiteProfiles Plus3 domain profile. 740 873 IPR004343 GO:0003677
Dere10g1892 1652 CDD PHD5_NSD 382 427 - -
Dere10g1892 1652 MobiDBLite consensus disorder prediction 345 368 - -
Dere10g1892 1652 MobiDBLite consensus disorder prediction 947 986 - -
Dere10g1892 1652 FunFam Zinc finger CCCH domain-containing protein 19 372 472 - -
Dere10g1892 1652 SUPERFAMILY FYVE/PHD zinc finger 379 432 IPR011011 -
Dere10g1892 1652 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 215 1652 - -
Dere10g1892 1652 SMART swib_2 613 684 IPR019835 -
Dere10g1892 1652 Pfam Plus-3 domain 745 848 IPR004343 GO:0003677
Dere10g1892 1652 CDD SWIB-MDM2_like 604 679 - -
Dere10g1892 1652 SUPERFAMILY Plus3-like 741 870 IPR036128 GO:0003677
Dere10g1892 1652 MobiDBLite consensus disorder prediction 527 600 - -
Dere10g1892 1652 Pfam SWIB/MDM2 domain 606 679 IPR003121 -
Dere10g1892 1652 ProSitePatterns Zinc finger PHD-type signature. 383 443 IPR019786 -
Dere10g1892 1652 MobiDBLite consensus disorder prediction 1 76 - -
Dere10g1892 1652 Gene3D - 1080 1139 IPR035445 -
Dere10g1892 1652 Gene3D SWIB/MDM2 domain 593 689 IPR036885 -
Dere10g1892 1652 Coils Coil 128 164 - -
Dere10g1892 1652 Gene3D - 742 870 IPR036128 GO:0003677
Dere10g1892 1652 SMART PHD_3 382 428 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1892 Dere-ChrDere10 32656554 32667790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1892 380 460 PHD Transcription Factor Family AT4G14920 34.568 1.34e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dere10g1892 Plus-3 9.5e-24 No_clan