Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1889 ATGGAGGTTGTGGTCGCGAAAGCGTTAAAACCGAGTTTGTATGGAGAATTGGCGTCTCTAAAATCAACACAGCAAGCTTTGGGCGAGGAATTTTGGTGCTTGAATTCGAATAACGGCGTTGCTGTTGAGGATTTCTCAGTGGATGACCTATTCGATTTCTCTCAGGGTGAATTCCAGCCTGAGTATGAAGTTGAAGAAGAAGACGACGAGGAAAAAGACAGTCTCTCCGGTTCCTCCTCACAAGAAGGGAGCGAAGAAGACACCCGCTCCAATTCCTCTTCCGGCGCCGGCGATTCCGAGTTCGTTCTTTCTAACGAACTCACCGTTCCGGACGATGATTTGGCAGACCTCGAATGGGTTTCTCACTTCGTAGACGATTCTCTCCCGGAGCTCTCTCTTTTGTACCCCGTCCGTTCAGAGCAAACGATGACTCGGTCCGAACCGGAACCTAGACCGGGCTTTGCAAAAACTCCTTGTTTTCCCTTCGTATTTCCCGTCAAGGCGAGAAGCACTAAGCGTAGAAGAGCCAACGAGCTAGCCTGGTTGATAAGCCCCTTGCCTTCCCGGCCGTCTTCGCCGCTGTCTTCATGTTCATCGGCGTTATCCTCGACGCCGACTCTCATCTCGGCCAGCGCCGTTCCAAACACTGCCTTGTTACACGCCTTTAGCGAGCCGCCGGCGAAGAAGCAGAAGAAAAAAGCGGAGGCTCAAGCGGGTGTTGTTGGTGGTGGGTCCCAGATTCAGCGTCGGTGCAGCCATTGCCAGGTGCAGAAGACCCCGCAGTGGAGAACCGGTCCACTAGGCGCCAAAACCCTTTGTAACGCTTGTGGGGTCCGTTACAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCAGCCTGTAGCCCAACGTTCTCTAGCGTTATTCACTCGAACAGCCATCGGAAAGTGCTAGAGATGAGGAAGAGGAAGGAGATAAGTGAACCGGAATCTGGTTTGACTCAGACACAGGCTGTTTCGAGTTGCTGA 1005 0.5274 MEVVVAKALKPSLYGELASLKSTQQALGEEFWCLNSNNGVAVEDFSVDDLFDFSQGEFQPEYEVEEEDDEEKDSLSGSSSQEGSEEDTRSNSSSGAGDSEFVLSNELTVPDDDLADLEWVSHFVDDSLPELSLLYPVRSEQTMTRSEPEPRPGFAKTPCFPFVFPVKARSTKRRRANELAWLISPLPSRPSSPLSSCSSALSSTPTLISASAVPNTALLHAFSEPPAKKQKKKAEAQAGVVGGGSQIQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSSVIHSNSHRKVLEMRKRKEISEPESGLTQTQAVSSC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1889 334 MobiDBLite consensus disorder prediction 315 334 - -
Dere10g1889 334 ProSiteProfiles GATA-type zinc finger domain profile. 245 281 IPR000679 GO:0006355|GO:0043565
Dere10g1889 334 FunFam GATA transcription factor 243 327 - -
Dere10g1889 334 MobiDBLite consensus disorder prediction 61 99 - -
Dere10g1889 334 Gene3D - 244 319 IPR013088 GO:0006355|GO:0008270
Dere10g1889 334 SMART GATA_3 245 299 IPR000679 GO:0006355|GO:0043565
Dere10g1889 334 Pfam GATA zinc finger 251 284 IPR000679 GO:0006355|GO:0043565
Dere10g1889 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 308 - -
Dere10g1889 334 CDD ZnF_GATA 250 307 IPR000679 GO:0006355|GO:0043565
Dere10g1889 334 ProSitePatterns GATA-type zinc finger domain. 251 276 IPR000679 GO:0006355|GO:0043565
Dere10g1889 334 PANTHER GATA TRANSCRIPTION FACTOR 33 323 - -
Dere10g1889 334 PIRSF Txn_fac_GATA_plant 16 333 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dere10g1889 334 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1889 Dere-ChrDere10 32620994 32622102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1889 8 327 C2C2-Gata Transcription Factor Family AT5G66320 43.119 3.27e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere10g1889 GATA 1.1e-15 CL0167