Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1885 ATGGCCTTTCGTCCAGAGTTTTCAGAGTCAGAAAAGTCAGCAACCCACAAGCCTAGCTGCAAGCACAGAGTGACTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGATACAGTGTGATGTGTGTGAGAAAGAGGAGGCCTCTCTATTCTGTCCCTCAGACGAAGCTGCCCTCTGCTATGGCTGTGATCGCACCATCCACCATGCCAACAAGCTTGCACGCAGACATGCTCGCCTCTCTCTTCACCGCCCCTCCTCTAATGCATCATCCCCTCTCTGTGATATCTGCCAAGAGAGACGAGCATATCTATTTTGCCAAGAGGACAGAGCAATACTATGCAGAGAATGTGACCTTCATATACACAGAGCCACAGAGCAGACCCAGAAACATACCAGGTTTCTTCTCACAGGGGTGAAGATTTCTGCTCCAATTTCAAACACAGACTTTAAAGCAAGAAGCTCTCATTCAAACATAAACAGACACAGATCAGTTTTCAGTGAAAATGCCAGTTCTTCAATTGTGAATAGTTCTTTAGCGTCAGCTACTGCAACAAGCAACGTTGAAGAGTACATTATTAGTGATGACACAAGTTCAGTTTCAACAAGCAGCATTTCTGAATATTTGATTGAGAAGATACCTGGTTATTGCTTTGAAGATCTTCTTGATGCTTCAATTCCTCCTCCTAATGGTTTCTGTAAGGACTATGACAACCTCTCAGCATTTTAG 732 0.444 MAFRPEFSESEKSATHKPSCKHRVTHREREREREREMKIQCDVCEKEEASLFCPSDEAALCYGCDRTIHHANKLARRHARLSLHRPSSNASSPLCDICQERRAYLFCQEDRAILCRECDLHIHRATEQTQKHTRFLLTGVKISAPISNTDFKARSSHSNINRHRSVFSENASSSIVNSSLASATATSNVEEYIISDDTSSVSTSSISEYLIEKIPGYCFEDLLDASIPPPNGFCKDYDNLSAF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1885 243 CDD Bbox1_BBX-like 41 83 - -
Dere10g1885 243 PANTHER B-BOX ZINC FINGER PROTEIN 22 37 226 - -
Dere10g1885 243 SMART bboxneu5 90 137 IPR000315 GO:0008270
Dere10g1885 243 SMART bboxneu5 36 83 IPR000315 GO:0008270
Dere10g1885 243 MobiDBLite consensus disorder prediction 1 31 - -
Dere10g1885 243 ProSiteProfiles Zinc finger B-box type profile. 36 83 IPR000315 GO:0008270
Dere10g1885 243 CDD Bbox1_BBX-like 94 137 - -
Dere10g1885 243 Gene3D Classic Zinc Finger 36 133 - -
Dere10g1885 243 Pfam B-box zinc finger 39 80 IPR000315 GO:0008270
Dere10g1885 243 Pfam B-box zinc finger 93 134 IPR000315 GO:0008270
Dere10g1885 243 ProSiteProfiles Zinc finger B-box type profile. 90 137 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1885 Dere-ChrDere10 32559493 32562118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1885 37 239 C2C2-CO-like Transcription Factor Family AT1G75540 50.235 1.82e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dere10g1885 zf-B_box 3.4e-08 No_clan