Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1878 ATGACGGCGACGTTCCGGTGCGTGCGGGTGCAGTCTATGGATGATTGGGTAGACGAGTATGCGTATCATACATCAGTGAGCATTGGAGGACATGTGTTTAGTGGTCTTGTTTATGATCAAGGCCCTAACAGTGAAGTAGGTGGTGGTGAGACTTCTTCAGTCCCTCTTCTTCTTCAGCATCACAACGCTGCGACGCAAACCCATCATGAAGGTGCAACTATGGCTATGGCTCCTCCATTCTCATCTTCTTCTGCTGCAGATTCTACCATTCATCCAACATATCCATATCCCCTAACTGCCACCTTCATGCCTGGTATGCCTTATTTCTCAAACCCCAAACCATAG 345 0.4812 MTATFRCVRVQSMDDWVDEYAYHTSVSIGGHVFSGLVYDQGPNSEVGGGETSSVPLLLQHHNAATQTHHEGATMAMAPPFSSSSAADSTIHPTYPYPLTATFMPGMPYFSNPKP 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1878 114 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 97 IPR007818 GO:0003700|GO:0006355
Dere10g1878 114 NCBIfam LRP1 C-terminal domain 2 42 IPR006511 -
Dere10g1878 114 Pfam Domain of unknown function (DUF702) 2 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1878 Dere-ChrDere10 32511489 32511833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1878 3 113 C2H2 Transcription Factor Family AT1G19790 39.496 1.47e-17 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere10g1878 DUF702 6.1e-16 No_clan