Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1877 ATGAATGCCACAAGAGCTCCGACTTCTCATCCTTCGCTCTACAGGTGCGCTTGCTTCTCTCTCAAAGTAGTCATGGCTTCCGATTCATCTCCGACGAATTTCAACAACGGTCCTTCCTCCCCCGATGATTCCTTTTCCAGCCCAATCGGCAACTCATTATCGTCTACCGGCGATGCCACTCATCGTAGAACGGGCCGGCGTTCGTCTACACCATCTGCATTTGCAACTCCTCCGTCTAATCGATCCAGATTCGCCTCCTCCGATGCTACTCCAACTCCATCTCGGTCCAGGCAAAGGGGAGGTGGTCGGAGAGCGTCCATGTCTACCCCTGTTGCTGCCACACCAACATCCACTGATGACGCACCCATCTCTTCAGAAGGTGGAGAGGGCTACAATGTAGACGACGTTAGGCCTACCTTCGTCTGGGGTACCAATATAAGCGTAGAAGACGTAAATGAGGCAATTCAGAGGTTTTTGAAGCACTTCAGAGAGCAGTCATCTCAGAGTGATGGATTGCATATGGAGGGGAAATATGAGAGGGCTATCAAACTGGTCATTGAAATTGAGGGAGATTCACTGGACGTCAATGCACATGACGTGTTTGATTATGATCCGGACTTGTACACGAAAATGGTCAGATACCCACTCGAGGTTCTTGCAATTTTTGATTTGGTTTTGATGAACATGGTTAGTAGAATCAACCCGTTGTTCGAGAAGCACATTCAAACTCGAATTTTTAATCTGAAAACCTCAACCTCAATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCGTTGAAGGGAATGATTATACGATGCAGCTCAATCATACCAGAAATCAGGGAAGCTATATTTAGATGTCTCGTGTGTGGATATTGCTCTGACCCGGCTGCTGTAGAGAGAGGACGAATAACTGAACCTACTATATGTTTGAGGGAAGAGTGTCAAGCCAGAAACTCCATGACACTGGTCCATAACCGATGCAGGTTTGCAGACAAGCAAATTGTGAGGCTTCAGGAGACACCCGATGAGATACCTGAAGGGGGAACTCCGCACACAGTAAGCTTGCTAATGCATGACAAACTGGTGGATGCTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGAGCTATGAGTGTCAGGGTTGGACCAACTCAAAGAACTGTTAAATCATTGTTCAAGACTTACATTGACTGTCTCCACATTAAGAAGACGGATAAGTCAAGGATGCTGGCAGAGGATGCTATGGATGTTGATATTAGCGTGGGCAAAAATACAGAAGAAATTCATTTTGATGAAGAAAAGGTGGCTCAACTAAAAGAGTTCTCAAAACAGCCAGATATATATGAAAGGCTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGCCAGCTTTTTGGTGGCAATGCTTTAAAGTTGGCATCTGGTGCTAACTTCCGTGGTGATATTAATATTTTACTTGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAATACATACATAAGCTATCTCCACGTGGCATTTACACAAGTGGAAGGGGGAGCTCTGCTGTTGGACTGACTGCTTATGTGACCAAAGATCCTGAAACAGGCGAAACTGTTCTAGAGAGTGGTGCTCTAGTTTTAAGTGACAGAGGCATTTGCTGTATAGATGAATTCGACAAAATGTCTGACAACGCCAGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCGAAGGCAGGTATTATTGCCTCTCTCAATGCTAGGACTTCAGTGTTGGCTTGTGCAAATCCAAGTGGATCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCTACACTTCTGTCCAGGTTTGATTTGATCTACTTAATTCTTGACAAGGCTGATGAACAGACAGACAGACGACTTGCCAAGCATATTGTTTCCTTACACTTTGAGAATCCTGAGAGCATGGAGCAAGATGTGTTGGATCTTCCTACATTAACTGCTTATGTGAGCTATGCTCGAAAGCATATACACCCACAACTATCTGATGAAGCTGCTGAAGAATTGACAAGAGGTTATGTTGAGATAAGAAGAAGAGGAAACTTTCCAGGGAGTAGCAAAAAGGTGATAACAGCAACGCCAAGGCAGATTGAGAGTCTGATACGGCTTAGTGAAGCCTTGGCTCGAATTCGCTTCTCAGAATGGGTTGAAAAGCGTGATGTAATGGAGGCATTTCGGCTTTTAGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACCATTGACATGGATCTTATCACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGGGAGAGTCTGCTACAAGCAACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCAATGCGATTGTTGGAGTTACTGGAGGAGTTGAAGAAACAGAACGCTAGCGAAATTCACCTTACTGATCTAAGGAATGCAATTGCTACTCTGGCCAGCGAAGGATTTGTCGCTCAGCATGGTGACAGTATAAAAAGATCGTGA 2589 0.4492 MNATRAPTSHPSLYRCACFSLKVVMASDSSPTNFNNGPSSPDDSFSSPIGNSLSSTGDATHRRTGRRSSTPSAFATPPSNRSRFASSDATPTPSRSRQRGGGRRASMSTPVAATPTSTDDAPISSEGGEGYNVDDVRPTFVWGTNISVEDVNEAIQRFLKHFREQSSQSDGLHMEGKYERAIKLVIEIEGDSLDVNAHDVFDYDPDLYTKMVRYPLEVLAIFDLVLMNMVSRINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYCSDPAAVERGRITEPTICLREECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMLAEDAMDVDISVGKNTEEIHFDEEKVAQLKEFSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESMEQDVLDLPTLTAYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLQATRNIIMEKMQIGGPSMRLLELLEELKKQNASEIHLTDLRNAIATLASEGFVAQHGDSIKRS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1877 862 MobiDBLite consensus disorder prediction 27 59 - -
Dere10g1877 862 Pfam MCM P-loop domain 441 663 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 Gene3D - 254 393 IPR012340 -
Dere10g1877 862 Gene3D - 431 771 IPR027417 -
Dere10g1877 862 FunFam DNA helicase 434 772 - -
Dere10g1877 862 ProSitePatterns MCM family signature. 562 570 IPR018525 GO:0003677|GO:0005524|GO:0006260
Dere10g1877 862 FunFam DNA helicase 281 333 - -
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein family signature 633 641 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein family signature 494 509 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein family signature 582 595 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein family signature 554 568 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein family signature 606 618 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 CDD MCM4 456 765 - -
Dere10g1877 862 Gene3D - 772 860 IPR036388 -
Dere10g1877 862 Pfam MCM AAA-lid domain 679 765 IPR041562 -
Dere10g1877 862 Gene3D - 281 333 - -
Dere10g1877 862 ProSiteProfiles MCM family domain profile. 453 659 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 Pfam MCM N-terminal domain 153 250 IPR027925 -
Dere10g1877 862 MobiDBLite consensus disorder prediction 27 132 - -
Dere10g1877 862 Pfam MCM OB domain 254 383 IPR033762 -
Dere10g1877 862 SMART mcm 250 767 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 SUPERFAMILY Nucleic acid-binding proteins 173 404 IPR012340 -
Dere10g1877 862 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 152 825 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 327 339 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 469 480 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 276 289 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 615 632 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere10g1877 862 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 767 776 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere10g1877 862 Gene3D - 145 248 - -
Dere10g1877 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 779 IPR027417 -
Dere10g1877 862 SMART AAA_5 495 645 IPR003593 GO:0016887
Dere10g1877 862 MobiDBLite consensus disorder prediction 66 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1877 Dere-ChrDere10 32481326 32486969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1877 25 861 Core DNA Replication Machinery Family AT2G16440 76.269 0.0 1295