Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere10g1873 | ATGGGGAAGAAGAAAACGAGAGAAGGTGGCGGAAAAGAGCACTGCCCCTTGACTGTGTTTGTCTCGAACTTGCCCTACTCATTCACCAACTCTCAGCTGGAGGAGACTTTTAGTGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCAGCCCAGCATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGGACGATGCTAACCGTGCAATTGAGTTGAAGAATGGTTCGTCTGTTGGAGGTCGGAAAATTGCAGTAAAGCATGCTATGCCTCGTCCTCCCCGTGAAGCTCGACAATCAAAGTCAAATCAAGTGGATAAGACTGATGATATGCTGAAGTCGAAAAATGATGACAATGATAATGACTTTTCTGGAGCGGAGAAGCCTGCTTCAGTTATTAAGGAAAAAGTTTTGGATAAAGAAAAAAAATCAAGGAAGCCTGTTGAAGTGAAAAAGGCAGCCCTTTGTAGTGATATAGCGGATGAGGGGGGTTGTTCAGAAAAGCAGAGGGTTGCCAGAACTATCATTTTTGGTGGCCTTATTAATTCTGAAATGGCTGAAGTTGTTCACTGCCGAGCAAGGGAGATTGGCAGTGTGTGTTCTATAAAGTATCCTCTTCCTAAGGAAGAATTTGAGAAACATGGTCTTCTGCAAGATGGCTGCAAAATGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCAATGTTACATCTAAAAGACATAGGAGGAGGAACTGTCTGGGCACGTCAATTAGGTGGAGAGGGCTCCAAAACTCAAAAATGGAAGCTTATTGTCAGAAATCTTCCTTTCAAGGCCAAAGAAAATGAAGTGAAAGACATGTTTTCATCTGCCGGGTTTGTGTGGGATGTGTTTATTCCACGCAAGTCTGATACAGGTCTGTCAAAGGGTTTTGCATTTGTGAAATTCACATGCAAGCAAGATGTGGAAAATGCTATTCAGAAGCTTAATGGATTACAGTTTCGCAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAGTAATACAAATGCTGCACTTGCTTTAGAAAATGGAGAACAAAAGGTGAGGGATGAAGATGATAGTAGTTCCGAGGATGATTTAGAGGATGAGGTTGAGCATACAGGCAAACAGGCCCATCATGGAGACGATACTGATCAAGATGACTCCAATACCTCAGAGGAGCAAGATGCCCCATCTGAAGTTAATTTTGATAAGGAAGCAGACATTGCGAGAAAGGTTCTTAAGAACTTAATCACATCCTACCCCAAAGGAACATCAGTAAATGATGATTCTATGTTGTCTGAGAAAAATGAGTCAAAATCCAATAAAAATGTTAATGTGGAAGATAAAAAATCATCTAAGGAGTTCGAAAAGGTTACAGGTGTTTCTGAGCCTGAAATTTTGGACAGAAGTAAGGTATCAAATCTTAAGCAAACAGAAGAAGAAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAGCAACGGTTCTCTGGGTTTGGGGAAGTGGAATACTTTGTTCCAGTCCTTCACCAGGTGACCAAGCGGCCAAGAGGAACTGGTTTTCTTAAGTTTAAAACTGCAGATGCAGCTGATGCTGCAGTTTCAACAGCTAGTGCTGCTTCTGGCTTGGGTATTTTTCTGAAGGGTAGGCCATTAAAAGTTTTGAAGGCTTTAGATAAGAAATCAGCTCATGACAAGGAACTGGAGAAGGCCAAAAATGACAATCATGACCACCGCAATCTTTACCTGGCAAAGGAGGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAACGGAAAAAGTCAACAAAGCTCCAATCACCAAATTTTCATGTTTCAAGAACTAGACTTGTTATCTACAACTTATCAAAGTCAATGACTGAAAAGGAGCTCAAGAAGCTTTGCATTGATGCGGTTACCTCTAGAGCTACCAAGCAAAAACCTGAAATTCGCCAGATAAAGTTCATGAAGGATGTAAAGAAAGGAAAGGTTGTTACAAAAAATCAATCACGTGGAGTAGCATTTGTTGAATTTTCCGAGCATCAGCATGCCCTTGTGGCTCTAAGAGTTCTTAATAATAATCCAGAAACTTTTGGCCCTGAACATCGGCCAATTGTGGAGTTCGCTCTTGATAATGTTCAAACGCTGAAACTTCGGAAAGCAAAGCTACAATCTCAGCAGCAGGCTGCTGCTCTCAGTGAAGTCAAGGAAAACGAAGAACCCCACATATCCAGTGTCCACTCCAATAAAAAGGACAGAAAACGAAAATCTCGGGATCACGGCAAACCGGTTAAGGATTCAGTGCTCAATGAAGAAGATAAATCAGCAAGTACAGTGCCAAATGAAAAAGCCACGGGAGCACACAATTCTAAAAGGAAGAAAGGCAACCATAAAAGTCAAAAGGCAGAAGGGTCATCATCACATAAAGAAAAGTCAGAAGCCTTGTCAATGAAGCCAAAGAATTACCAAGATGGTCATAATCGTGGTGGTAGGACTTCAAGCACCGATACTGACACCTACAGAACAAGCAATGGTAAAAATGTAGATCATGGATTGAAAAAGAGGAAGGTGCAGAATCGGGCAGGACCTGGGGAACAAATACCAAAGAAACGGTCAAAAAAGAATAAAGAGCCTGTAGGGAAAGACGTGGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACAGCAGGGTTCACAAGGGAATGATGGTGAGAAAAAACCTTCCAAACAGCTTAGAAAATGGTCGCGGTACATAAAAGCCCTCATTCTTTCAGATAACTACGGAACTACCCTTTCCTTCATCATCACCGTTCATTTCGAATCTAGGACACCCAATGCTTCGCCGATTCAGCGTGCCACTGATATTTTTTCGTCTTCCAGCTCTCCATCGTATTCCACCTCCATGGCTAAACCAAAGGCTCAAAGACGAACCCTAGAGTCATACACAGTCAAACACATAAACAAAACCATTAGAGCCGGCGACTGCGTTCTAATGCGGCCCTCCGAGCCGTCGAAGCCGTCCTATGTGGCTAGGATCGAGCGGATCGAAGCTGACTCACGAGGCGCTAACGTTAAGGTTCACGTCCGTTGGTACTACCGGCCGGAAGAGTCTATCGGCGGCCGTCGCCAGTTCCACGGTTCTAAGGAGGTGTTCCTCTCGGATCACTTTGATGTTCAGAGCGCCGACACGATTGAAGGCAAGTGTACGGTTCATAGTTTTAAGGGCTACACGAAGCTCGATGCTGTTGGAAACGACGATTTCTTCTGTCGCTTCGAATACAATTCTGCCACCGGAGCCTTTAACCCTGATAGAGTCGCCGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACTTAATGGTCCAGTGTGAAGGCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTTCTGAAGATCAAAATAAGTTGCAAAATTCTCATTCGGCTGCGAGACATTCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGTGA | 3690 | 0.4317 | MGKKKTREGGGKEHCPLTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSAQHRGFGYVQFAVEDDANRAIELKNGSSVGGRKIAVKHAMPRPPREARQSKSNQVDKTDDMLKSKNDDNDNDFSGAEKPASVIKEKVLDKEKKSRKPVEVKKAALCSDIADEGGCSEKQRVARTIIFGGLINSEMAEVVHCRAREIGSVCSIKYPLPKEEFEKHGLLQDGCKMDASAVLYTSVKSARASVAMLHLKDIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKDMFSSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQDVENAIQKLNGLQFRKRLIAVDWAVPKKIYSSNTNAALALENGEQKVRDEDDSSSEDDLEDEVEHTGKQAHHGDDTDQDDSNTSEEQDAPSEVNFDKEADIARKVLKNLITSYPKGTSVNDDSMLSEKNESKSNKNVNVEDKKSSKEFEKVTGVSEPEILDRSKVSNLKQTEEEEEDLQRTVFISNLPFDCDNEEVKQRFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTADAADAAVSTASAASGLGIFLKGRPLKVLKALDKKSAHDKELEKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKSTKLQSPNFHVSRTRLVIYNLSKSMTEKELKKLCIDAVTSRATKQKPEIRQIKFMKDVKKGKVVTKNQSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQAAALSEVKENEEPHISSVHSNKKDRKRKSRDHGKPVKDSVLNEEDKSASTVPNEKATGAHNSKRKKGNHKSQKAEGSSSHKEKSEALSMKPKNYQDGHNRGGRTSSTDTDTYRTSNGKNVDHGLKKRKVQNRAGPGEQIPKKRSKKNKEPVGKDVVDKLDMLIEQYRSKFSQQGSQGNDGEKKPSKQLRKWSRYIKALILSDNYGTTLSFIITVHFESRTPNASPIQRATDIFSSSSSPSYSTSMAKPKAQRRTLESYTVKHINKTIRAGDCVLMRPSEPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSSEDQNKLQNSHSAARHSDTKVDTKRRRR | 1229 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere10g1873 | 1229 | SUPERFAMILY | RNA-binding domain, RBD | 267 | 355 | IPR035979 | GO:0003676 | |
Dere10g1873 | 1229 | Coils | Coil | 747 | 779 | - | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 385 | 402 | - | - | |
Dere10g1873 | 1229 | FunFam | - | 2 | 128 | - | - | |
Dere10g1873 | 1229 | ProSitePatterns | Zinc finger PHD-type signature. | 1155 | 1200 | IPR019786 | - | |
Dere10g1873 | 1229 | SMART | BAH_4 | 1034 | 1150 | IPR001025 | GO:0003682 | |
Dere10g1873 | 1229 | SUPERFAMILY | RNA-binding domain, RBD | 647 | 754 | IPR035979 | GO:0003676 | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 93 | 128 | - | - | |
Dere10g1873 | 1229 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 19 | 88 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 274 | 343 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 506 | 564 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 773 | 923 | - | - | |
Dere10g1873 | 1229 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 504 | 587 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | Pfam | BAH domain | 1035 | 1149 | IPR001025 | GO:0003682 | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 867 | 887 | - | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 365 | 421 | - | - | |
Dere10g1873 | 1229 | SMART | PHD_3 | 1154 | 1201 | IPR001965 | - | |
Dere10g1873 | 1229 | Gene3D | - | 231 | 403 | IPR012677 | - | |
Dere10g1873 | 1229 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 350 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | FunFam | RNA-binding motif protein 28 | 655 | 750 | - | - | |
Dere10g1873 | 1229 | Gene3D | - | 655 | 750 | IPR012677 | - | |
Dere10g1873 | 1229 | CDD | RRM4_RBM28_like | 656 | 753 | - | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 1003 | 1022 | - | - | |
Dere10g1873 | 1229 | SUPERFAMILY | RNA-binding domain, RBD | 497 | 590 | IPR035979 | GO:0003676 | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 840 | 858 | - | - | |
Dere10g1873 | 1229 | Pfam | PHD-finger | 1154 | 1202 | IPR019787 | - | |
Dere10g1873 | 1229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1147 | 1218 | IPR013083 | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 1208 | 1229 | - | - | |
Dere10g1873 | 1229 | CDD | RRM1_RBM28_like | 18 | 96 | - | - | |
Dere10g1873 | 1229 | PANTHER | RNA-BINDING MOTIF PROTEIN 14B | 14 | 961 | - | - | |
Dere10g1873 | 1229 | Gene3D | - | 2 | 108 | IPR012677 | - | |
Dere10g1873 | 1229 | ProSiteProfiles | BAH domain profile. | 1034 | 1150 | IPR001025 | GO:0003682 | |
Dere10g1873 | 1229 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 656 | 764 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | Coils | Coil | 582 | 602 | - | - | |
Dere10g1873 | 1229 | CDD | RRM2_RBM28_like | 273 | 349 | - | - | |
Dere10g1873 | 1229 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 257 | IPR035979 | GO:0003676 | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 437 | 477 | - | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 1003 | 1019 | - | - | |
Dere10g1873 | 1229 | ProSiteProfiles | Zinc finger PHD-type profile. | 1152 | 1203 | IPR019787 | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 86 | 133 | - | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 449 | 477 | - | - | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 888 | 923 | - | - | |
Dere10g1873 | 1229 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 17 | 95 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | Gene3D | - | 1003 | 1146 | IPR043151 | - | |
Dere10g1873 | 1229 | CDD | BAH_BAHCC1 | 1035 | 1170 | - | - | |
Dere10g1873 | 1229 | SUPERFAMILY | FYVE/PHD zinc finger | 1145 | 1204 | IPR011011 | - | |
Dere10g1873 | 1229 | FunFam | Chromatin remodeling protein EBS | 1007 | 1146 | - | - | |
Dere10g1873 | 1229 | Gene3D | - | 490 | 595 | IPR012677 | - | |
Dere10g1873 | 1229 | SMART | rrm1_1 | 657 | 748 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | SMART | rrm1_1 | 18 | 91 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | SMART | rrm1_1 | 273 | 346 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | SMART | rrm1_1 | 505 | 583 | IPR000504 | GO:0003723 | |
Dere10g1873 | 1229 | MobiDBLite | consensus disorder prediction | 800 | 819 | - | - | |
Dere10g1873 | 1229 | FunFam | Bromo-adjacent homology (BAH) domain-containing protein | 1147 | 1217 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere10g1873 | Dere-ChrDere10 | 32436040 | 32449056 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere10g1873 | 18 | 97 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 33.750 | 3.44e-07 | 52.0 |