Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1873 ATGGGGAAGAAGAAAACGAGAGAAGGTGGCGGAAAAGAGCACTGCCCCTTGACTGTGTTTGTCTCGAACTTGCCCTACTCATTCACCAACTCTCAGCTGGAGGAGACTTTTAGTGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCAGCCCAGCATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGGACGATGCTAACCGTGCAATTGAGTTGAAGAATGGTTCGTCTGTTGGAGGTCGGAAAATTGCAGTAAAGCATGCTATGCCTCGTCCTCCCCGTGAAGCTCGACAATCAAAGTCAAATCAAGTGGATAAGACTGATGATATGCTGAAGTCGAAAAATGATGACAATGATAATGACTTTTCTGGAGCGGAGAAGCCTGCTTCAGTTATTAAGGAAAAAGTTTTGGATAAAGAAAAAAAATCAAGGAAGCCTGTTGAAGTGAAAAAGGCAGCCCTTTGTAGTGATATAGCGGATGAGGGGGGTTGTTCAGAAAAGCAGAGGGTTGCCAGAACTATCATTTTTGGTGGCCTTATTAATTCTGAAATGGCTGAAGTTGTTCACTGCCGAGCAAGGGAGATTGGCAGTGTGTGTTCTATAAAGTATCCTCTTCCTAAGGAAGAATTTGAGAAACATGGTCTTCTGCAAGATGGCTGCAAAATGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCAATGTTACATCTAAAAGACATAGGAGGAGGAACTGTCTGGGCACGTCAATTAGGTGGAGAGGGCTCCAAAACTCAAAAATGGAAGCTTATTGTCAGAAATCTTCCTTTCAAGGCCAAAGAAAATGAAGTGAAAGACATGTTTTCATCTGCCGGGTTTGTGTGGGATGTGTTTATTCCACGCAAGTCTGATACAGGTCTGTCAAAGGGTTTTGCATTTGTGAAATTCACATGCAAGCAAGATGTGGAAAATGCTATTCAGAAGCTTAATGGATTACAGTTTCGCAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAGTAATACAAATGCTGCACTTGCTTTAGAAAATGGAGAACAAAAGGTGAGGGATGAAGATGATAGTAGTTCCGAGGATGATTTAGAGGATGAGGTTGAGCATACAGGCAAACAGGCCCATCATGGAGACGATACTGATCAAGATGACTCCAATACCTCAGAGGAGCAAGATGCCCCATCTGAAGTTAATTTTGATAAGGAAGCAGACATTGCGAGAAAGGTTCTTAAGAACTTAATCACATCCTACCCCAAAGGAACATCAGTAAATGATGATTCTATGTTGTCTGAGAAAAATGAGTCAAAATCCAATAAAAATGTTAATGTGGAAGATAAAAAATCATCTAAGGAGTTCGAAAAGGTTACAGGTGTTTCTGAGCCTGAAATTTTGGACAGAAGTAAGGTATCAAATCTTAAGCAAACAGAAGAAGAAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAGCAACGGTTCTCTGGGTTTGGGGAAGTGGAATACTTTGTTCCAGTCCTTCACCAGGTGACCAAGCGGCCAAGAGGAACTGGTTTTCTTAAGTTTAAAACTGCAGATGCAGCTGATGCTGCAGTTTCAACAGCTAGTGCTGCTTCTGGCTTGGGTATTTTTCTGAAGGGTAGGCCATTAAAAGTTTTGAAGGCTTTAGATAAGAAATCAGCTCATGACAAGGAACTGGAGAAGGCCAAAAATGACAATCATGACCACCGCAATCTTTACCTGGCAAAGGAGGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAACGGAAAAAGTCAACAAAGCTCCAATCACCAAATTTTCATGTTTCAAGAACTAGACTTGTTATCTACAACTTATCAAAGTCAATGACTGAAAAGGAGCTCAAGAAGCTTTGCATTGATGCGGTTACCTCTAGAGCTACCAAGCAAAAACCTGAAATTCGCCAGATAAAGTTCATGAAGGATGTAAAGAAAGGAAAGGTTGTTACAAAAAATCAATCACGTGGAGTAGCATTTGTTGAATTTTCCGAGCATCAGCATGCCCTTGTGGCTCTAAGAGTTCTTAATAATAATCCAGAAACTTTTGGCCCTGAACATCGGCCAATTGTGGAGTTCGCTCTTGATAATGTTCAAACGCTGAAACTTCGGAAAGCAAAGCTACAATCTCAGCAGCAGGCTGCTGCTCTCAGTGAAGTCAAGGAAAACGAAGAACCCCACATATCCAGTGTCCACTCCAATAAAAAGGACAGAAAACGAAAATCTCGGGATCACGGCAAACCGGTTAAGGATTCAGTGCTCAATGAAGAAGATAAATCAGCAAGTACAGTGCCAAATGAAAAAGCCACGGGAGCACACAATTCTAAAAGGAAGAAAGGCAACCATAAAAGTCAAAAGGCAGAAGGGTCATCATCACATAAAGAAAAGTCAGAAGCCTTGTCAATGAAGCCAAAGAATTACCAAGATGGTCATAATCGTGGTGGTAGGACTTCAAGCACCGATACTGACACCTACAGAACAAGCAATGGTAAAAATGTAGATCATGGATTGAAAAAGAGGAAGGTGCAGAATCGGGCAGGACCTGGGGAACAAATACCAAAGAAACGGTCAAAAAAGAATAAAGAGCCTGTAGGGAAAGACGTGGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACAGCAGGGTTCACAAGGGAATGATGGTGAGAAAAAACCTTCCAAACAGCTTAGAAAATGGTCGCGGTACATAAAAGCCCTCATTCTTTCAGATAACTACGGAACTACCCTTTCCTTCATCATCACCGTTCATTTCGAATCTAGGACACCCAATGCTTCGCCGATTCAGCGTGCCACTGATATTTTTTCGTCTTCCAGCTCTCCATCGTATTCCACCTCCATGGCTAAACCAAAGGCTCAAAGACGAACCCTAGAGTCATACACAGTCAAACACATAAACAAAACCATTAGAGCCGGCGACTGCGTTCTAATGCGGCCCTCCGAGCCGTCGAAGCCGTCCTATGTGGCTAGGATCGAGCGGATCGAAGCTGACTCACGAGGCGCTAACGTTAAGGTTCACGTCCGTTGGTACTACCGGCCGGAAGAGTCTATCGGCGGCCGTCGCCAGTTCCACGGTTCTAAGGAGGTGTTCCTCTCGGATCACTTTGATGTTCAGAGCGCCGACACGATTGAAGGCAAGTGTACGGTTCATAGTTTTAAGGGCTACACGAAGCTCGATGCTGTTGGAAACGACGATTTCTTCTGTCGCTTCGAATACAATTCTGCCACCGGAGCCTTTAACCCTGATAGAGTCGCCGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACTTAATGGTCCAGTGTGAAGGCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTTCTGAAGATCAAAATAAGTTGCAAAATTCTCATTCGGCTGCGAGACATTCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGTGA 3690 0.4317 MGKKKTREGGGKEHCPLTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSAQHRGFGYVQFAVEDDANRAIELKNGSSVGGRKIAVKHAMPRPPREARQSKSNQVDKTDDMLKSKNDDNDNDFSGAEKPASVIKEKVLDKEKKSRKPVEVKKAALCSDIADEGGCSEKQRVARTIIFGGLINSEMAEVVHCRAREIGSVCSIKYPLPKEEFEKHGLLQDGCKMDASAVLYTSVKSARASVAMLHLKDIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKDMFSSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQDVENAIQKLNGLQFRKRLIAVDWAVPKKIYSSNTNAALALENGEQKVRDEDDSSSEDDLEDEVEHTGKQAHHGDDTDQDDSNTSEEQDAPSEVNFDKEADIARKVLKNLITSYPKGTSVNDDSMLSEKNESKSNKNVNVEDKKSSKEFEKVTGVSEPEILDRSKVSNLKQTEEEEEDLQRTVFISNLPFDCDNEEVKQRFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTADAADAAVSTASAASGLGIFLKGRPLKVLKALDKKSAHDKELEKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKSTKLQSPNFHVSRTRLVIYNLSKSMTEKELKKLCIDAVTSRATKQKPEIRQIKFMKDVKKGKVVTKNQSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQAAALSEVKENEEPHISSVHSNKKDRKRKSRDHGKPVKDSVLNEEDKSASTVPNEKATGAHNSKRKKGNHKSQKAEGSSSHKEKSEALSMKPKNYQDGHNRGGRTSSTDTDTYRTSNGKNVDHGLKKRKVQNRAGPGEQIPKKRSKKNKEPVGKDVVDKLDMLIEQYRSKFSQQGSQGNDGEKKPSKQLRKWSRYIKALILSDNYGTTLSFIITVHFESRTPNASPIQRATDIFSSSSSPSYSTSMAKPKAQRRTLESYTVKHINKTIRAGDCVLMRPSEPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSSEDQNKLQNSHSAARHSDTKVDTKRRRR 1229
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1873 1229 SUPERFAMILY RNA-binding domain, RBD 267 355 IPR035979 GO:0003676
Dere10g1873 1229 Coils Coil 747 779 - -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 385 402 - -
Dere10g1873 1229 FunFam - 2 128 - -
Dere10g1873 1229 ProSitePatterns Zinc finger PHD-type signature. 1155 1200 IPR019786 -
Dere10g1873 1229 SMART BAH_4 1034 1150 IPR001025 GO:0003682
Dere10g1873 1229 SUPERFAMILY RNA-binding domain, RBD 647 754 IPR035979 GO:0003676
Dere10g1873 1229 MobiDBLite consensus disorder prediction 93 128 - -
Dere10g1873 1229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Dere10g1873 1229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Dere10g1873 1229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 564 IPR000504 GO:0003723
Dere10g1873 1229 MobiDBLite consensus disorder prediction 773 923 - -
Dere10g1873 1229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 587 IPR000504 GO:0003723
Dere10g1873 1229 Pfam BAH domain 1035 1149 IPR001025 GO:0003682
Dere10g1873 1229 MobiDBLite consensus disorder prediction 867 887 - -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 365 421 - -
Dere10g1873 1229 SMART PHD_3 1154 1201 IPR001965 -
Dere10g1873 1229 Gene3D - 231 403 IPR012677 -
Dere10g1873 1229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Dere10g1873 1229 FunFam RNA-binding motif protein 28 655 750 - -
Dere10g1873 1229 Gene3D - 655 750 IPR012677 -
Dere10g1873 1229 CDD RRM4_RBM28_like 656 753 - -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 1003 1022 - -
Dere10g1873 1229 SUPERFAMILY RNA-binding domain, RBD 497 590 IPR035979 GO:0003676
Dere10g1873 1229 MobiDBLite consensus disorder prediction 840 858 - -
Dere10g1873 1229 Pfam PHD-finger 1154 1202 IPR019787 -
Dere10g1873 1229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1147 1218 IPR013083 -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 1208 1229 - -
Dere10g1873 1229 CDD RRM1_RBM28_like 18 96 - -
Dere10g1873 1229 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 961 - -
Dere10g1873 1229 Gene3D - 2 108 IPR012677 -
Dere10g1873 1229 ProSiteProfiles BAH domain profile. 1034 1150 IPR001025 GO:0003682
Dere10g1873 1229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 656 764 IPR000504 GO:0003723
Dere10g1873 1229 Coils Coil 582 602 - -
Dere10g1873 1229 CDD RRM2_RBM28_like 273 349 - -
Dere10g1873 1229 SUPERFAMILY RNA-binding domain, RBD 18 257 IPR035979 GO:0003676
Dere10g1873 1229 MobiDBLite consensus disorder prediction 437 477 - -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 1003 1019 - -
Dere10g1873 1229 ProSiteProfiles Zinc finger PHD-type profile. 1152 1203 IPR019787 -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 86 133 - -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 449 477 - -
Dere10g1873 1229 MobiDBLite consensus disorder prediction 888 923 - -
Dere10g1873 1229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Dere10g1873 1229 Gene3D - 1003 1146 IPR043151 -
Dere10g1873 1229 CDD BAH_BAHCC1 1035 1170 - -
Dere10g1873 1229 SUPERFAMILY FYVE/PHD zinc finger 1145 1204 IPR011011 -
Dere10g1873 1229 FunFam Chromatin remodeling protein EBS 1007 1146 - -
Dere10g1873 1229 Gene3D - 490 595 IPR012677 -
Dere10g1873 1229 SMART rrm1_1 657 748 IPR000504 GO:0003723
Dere10g1873 1229 SMART rrm1_1 18 91 IPR000504 GO:0003723
Dere10g1873 1229 SMART rrm1_1 273 346 IPR000504 GO:0003723
Dere10g1873 1229 SMART rrm1_1 505 583 IPR000504 GO:0003723
Dere10g1873 1229 MobiDBLite consensus disorder prediction 800 819 - -
Dere10g1873 1229 FunFam Bromo-adjacent homology (BAH) domain-containing protein 1147 1217 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere10g1873 Dere-ChrDere10 32436040 32449056 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1873 18 97 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 3.44e-07 52.0
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere10g1873 BAH 4.1e-21 No_clan