Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1872 ATGGGTGAACTTTCTGGTTCTGATACCAAATTTGTTGGGTACTTATCCTCTGCAACCTTGACTATTACTTCTCGTTATATAAAGTATCAAGCAGAGGATTTCGACTGTCAGAATATCATGGCAACTTATTTACCAACTTCATATTCTGAGACACCAATTACTCCTAGTAATATAACGTTGTATATGAACGCTGGTTCATATCCAGATGCATTCTCTGGCAATTCTCAGGAGCAAAATAACTGCTTTGTGATTCCATCAATAAGCTTGTCTCATTCTGCTCCTGAGCAACAAGAAATCTTAGGAAATTTTGGTGGGTTGCAGACTGGGGACCATGATTTCACTGCATGGAGACAAGGAAGAAATGAGATGCTAGTCACACATCCAATGGATGGACAGAACTTGCAGGGCCAGGGATTATCTCTCAGCCTCGGAACCCAAATACCATCTGTAATCCAAATGCCTCCTTTCCATGACCAAAGTTCTAATCCGAGTTTTGATTCGTTTTTAGGTCCAAATCCATCAATTACAGGCCATAAAAGTGGCTCATCTAAGCATGAATGTTTGAGGCATTCTGAAATTTTGCCACCTGATCTACCCGAAGCTAATCAAGATTTGAATAGAGGAGATTATTCTTTGCATGGCATGTCTAGTGTTTTTAGAACCAATCCTAATTCGAAATACCTCAAGGCAGCGCAACAGCTACTTGATGAAGTTGTTGACATCCAAAAAGCTATAAATAGACCTAATACGAAAAAAAGTCATAGTACACATGAAAACTCTAAGACCTCCAAAGATGATGGGAGACTAGAAAGTGAAGGCGAACCTGCAAATGGAGTGCGTAACCCTCAAGATTCAGCTAGCAACTCCTCTTGTGAGCTTTCGCATGCTGAAAAACAAGATCTTCAGAATAAGTTAACAAAGCTTCTGTCAATGCTGGATGAGGTTGACAGTAGGTACAAACAATATTATCATCAGATGCAGATAGTGGTATCGTCATTTGATGTGATAGCAGGACGTGGGGCTGCAAAACCATACACAGCCTTAGCTCTCCAAACCATTTCGCGTCATTTCCGGTGCTTGCGTGATGCAATCACGGGCCAAATCAGTGCAACTCAGAAGAGCCTCGGAGAGCAAGATGCTTCAGGAAATAATAAAGGAGTTGGAATATCAAGACTCCGGTATGTGGACCAACAAATCCGGCAACAGAGGGCCCTCCAGCAGCTTGGTGTGATGCAACATGCATGGAGGCCACAGAGGGGATTGCCAGAAAGCTCTGTTTCAATCCTTCGTGCTTGGCTGTTTGAACATTTCCTTCATCCCTACCCGAAAGATTCTGATAAGATCATGCTAGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGAGTGCGTCTATGGAAACCTATGATCGAGGAGATGTACAAGGAAGAGATTGGCGATGCCGACTTGGACTCCAGTTCTTCATCTGAAAATGCGTCCAAGGCCATGAAAAGTGATGTAAAGATCTCTGATGATGGGTGCAATGATCTGCAGCAAAGTCAAAGTTCAATGGCCAGCAAGAATTGCAATGTTGCACAAGCTAAGGACTTCAGATCTGATAATGTTCTTGAAAAAGAAATAATGGGATCCTTGGGATTGGCTAGCCTTCATCGAGGAGGTCAAGAGGATGAGATGGAATATGGGGCAGTTAAGCAAACTGAGGAGCATCAAAGGCCCAACTTCGATGATTGTAGTCTCTTCCCAGATGACACAGTTGTTCAGTACCGTGGAAGCAGTGCCGGGTTTGTGTCGGTTGCTCCTCTGATGTGTCAAATGTCGGAGTTGGGAAGGTGCAAGGCAGGAAATGGAGTGTCCCTGACATTAGGTTTGCAGCATTGTGAGGGTGGTGATTTTATGTCTGGTGAGAGCCATCACAGTTTTGTTGTCATGAGGGAGGATGGCATTTACAATGCTGCATCAGTTGCTGCAATCGGAGCTGAGACATCAGAACTTGAGTGTGTGGATGCTAGAAACCAGCAACGAAGGTTCAGTTCGCCCCAATTATTACATGATTTTGTAGTATAA 2085 0.4345 MGELSGSDTKFVGYLSSATLTITSRYIKYQAEDFDCQNIMATYLPTSYSETPITPSNITLYMNAGSYPDAFSGNSQEQNNCFVIPSISLSHSAPEQQEILGNFGGLQTGDHDFTAWRQGRNEMLVTHPMDGQNLQGQGLSLSLGTQIPSVIQMPPFHDQSSNPSFDSFLGPNPSITGHKSGSSKHECLRHSEILPPDLPEANQDLNRGDYSLHGMSSVFRTNPNSKYLKAAQQLLDEVVDIQKAINRPNTKKSHSTHENSKTSKDDGRLESEGEPANGVRNPQDSASNSSCELSHAEKQDLQNKLTKLLSMLDEVDSRYKQYYHQMQIVVSSFDVIAGRGAAKPYTALALQTISRHFRCLRDAITGQISATQKSLGEQDASGNNKGVGISRLRYVDQQIRQQRALQQLGVMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKEEIGDADLDSSSSSENASKAMKSDVKISDDGCNDLQQSQSSMASKNCNVAQAKDFRSDNVLEKEIMGSLGLASLHRGGQEDEMEYGAVKQTEEHQRPNFDDCSLFPDDTVVQYRGSSAGFVSVAPLMCQMSELGRCKAGNGVSLTLGLQHCEGGDFMSGESHHSFVVMREDGIYNAASVAAIGAETSELECVDARNQQRRFSSPQLLHDFVV 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1872 694 MobiDBLite consensus disorder prediction 488 507 - -
Dere10g1872 694 Coils Coil 298 318 - -
Dere10g1872 694 MobiDBLite consensus disorder prediction 159 181 - -
Dere10g1872 694 SMART prehox3 216 366 IPR006563 -
Dere10g1872 694 CDD homeodomain 415 476 IPR001356 GO:0003677
Dere10g1872 694 MobiDBLite consensus disorder prediction 251 273 - -
Dere10g1872 694 Pfam Associated with HOX 224 365 IPR006563 -
Dere10g1872 694 ProSiteProfiles 'Homeobox' domain profile. 412 475 IPR001356 GO:0003677
Dere10g1872 694 SMART HOX_1 415 479 IPR001356 GO:0003677
Dere10g1872 694 MobiDBLite consensus disorder prediction 159 187 - -
Dere10g1872 694 Gene3D - 411 489 - -
Dere10g1872 694 Pfam Homeobox KN domain 432 471 IPR008422 GO:0003677|GO:0006355
Dere10g1872 694 MobiDBLite consensus disorder prediction 278 296 - -
Dere10g1872 694 SUPERFAMILY Homeodomain-like 416 482 IPR009057 -
Dere10g1872 694 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 155 498 - -
Dere10g1872 694 MobiDBLite consensus disorder prediction 245 297 - -
Dere10g1872 694 FunFam BEL1-like homeodomain protein 4 418 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1872 Dere-ChrDere10 32416992 32421844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1872 47 512 Homeobox Transcription Factor Family AT4G34610 49.687 5.11e-126 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere10g1872 POX 1.9e-50 No_clan