Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1871 ATGGAGTCACCGGCAGTCGCTATACTGCCAGCTAAGCGCCCATCAAGCGGATTTGAGGCAGAGAAACACAAAAGAATGAAACCATCGAGTTATAGCACACCGTACTCAGCACATAAGGATGATAAAATTGAACTGAAGACACCTAAGAATTCTTCAAATGTTGTTGATTATAGCAATCCATATGCCATCACTGACTTGCTTGATAGTCTGAACCATGGAAAGTTTGGAAGTGTGACAAAGGAAATAGAGAACCTTATAGCTCGAAAAATGCAAACATTGAGTCCTATATTTGCCAAAAATCCCACACTTCTACGCTTGATGGAAGTGGGAATCAACCACAATGAAGAAACTGATAAGGTGAAAAATCAACAAGTTCATGATTTGGCACATAAAAAAATCATAGATTTGGTGGACGAGCACCCAGCAAAGGATGCTCCAAAAGCATCTTTGTCTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATCAAAAACCTTATCTACCATTTCAACAAGTTATACTGCCACAGCCTGCGGGCCAGTCTACCATAAAGGATATAGTTGAGTACCATGCTCCCAGTGCATACCATCCTCCCATTGGGTTCCATGCTGGAAGTGTAGATGTAAAACCTGAAAAATGGCTGGCTGGTAATGATAGTGTTAGAAAAGATAACGGTGTTTATATTGGTGTTCAAGAAGAAGATCTTCAGGTTGATACAAAGGATGATGGTCTAGGAGATATATGGAGAGAGATGTCAATGGCAATAGAATGCTCCAAGGATGTTTCTGTGAACCCTCTACCTGATGAAGAAGATGAAAAAGATGGGGAGGACTGTGATCACTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGCGGGGTTATCAACAGAGGAATTGAAACCATATTTGAATACCAATACAAGGTTAAAAGAAGTACAAGGACTTACATGCCTGATTCGTGGAATGCAAAAGAGAGAGCAGCACCTGAGGTATCCGGACTTAAATTTGGTGAAGATGGTCTGGTAGTTAGGGACATCTCTGCCCACCCTAGGCATATGAAGCAAATGAAACCTCATCAAGTTGAAGGATTTAATTTTCTTGTTAGAAACCTTGCGGGTGACAATCCAGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTGGGCAAGTATCCTAATGCTAGACCCCTTGTGGTTCTTCCTAAGGGAATATTAGCAACCTGGAAAAAGGAGTTCGACACTTGGCAAGTGGAGGACGTACCTCTTTTGGATTTTTACTCTGCAAAGGCAGATACTCGAGCTCAGCAACTAGAAGTCCTAAAGCAGTGGTTAGAGAGGAAAAGTATCCTCTTTCTCGGATACAAGCAATTTTCTTCAATTGTTTGTGATAGTGGAACAAGCAAGTTATCACTGTCTTGCCAAGAGATACTGCTTAAAGTTCCATCAATTCTAATTTTAGATGAGGGACACACACCAAGGAATGACAATACCGACATGGTTCAGTCCCTTGCCAAAGTGCAAACTCCTCGAAAAGTTGTTCTGTCAGGAACCCTCTATCAAAATCATGTCAAAGAGGTGTTTAACATTTTAAACCTTGTGCGGCCCAAGTTTTTACGTTCAGAGACATCTCGGCCTATTAAAAGGCGCATTGAGAGTAGAGTTCATGTACGAGGTGTGAAAAATAATTTTTCTGAGTTAGTAGAAAACACTTTGCAGAATGAATGTGATTTTAAAACAAAAGAAGCTGTCATTAAAGATTTGCGTGAGATGACGAGCAAGGTACTCCATTACTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTAGATTTTACTGTTGTACTCAATCTTACTCCCCAACAGAAGCATGAAGCTCAAAAACTAAAACATCTATCCAGAAAGTTTAAGATAAGTTCTGTAGGGAGTGCTGTTTATCTTCACCCTAAATTAAAACCTATGGCAGAAAAATGTGCTGAGAATTCTGCTGTATCTGATTACATGATGGATGAGAAAATAGAGAGTATAGATGTGGAAGATGGGGTGAAGTCGAAGTTCTTTCTTAAAATACTGAACCTATGTGAGTCAAGTGGGGAGAAGCTTCTAGTGTTTAGCCAATATCTCTTACCATTGAAGTATTTAGAAAGATTAGCTGTGAAAAGTAAGGGATGGAGTCTTGGAAGAGAAATTTTTGTCATATCAGGGGAATCAAGCTTTGAACAAAGAGAGTGGTCCATGGAGCGGTTTAACAATTCACCAGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGTATATCTTTGGTTGGGGCTTCACGCATAATCATTTTGGATGTTCATCTAAATCCGTCAGTTACTCGCCAAGCAATTGGTCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGGTAGCTGCTGATTCTCCCGAGGAGGAAGATCACGAAACTTGTTTTAAGAAGGAATTAATTTCAAAAGTGTGGTTTGAATGGAACGAGTATTGTGGTTTTCGTGATTTTGAAGTGCAGACTGTTGATGTTAAACAATGCGGTGATCTCTTTCTGGAAAGTCCATTGATAAGGGAGGATATAAAAGTTCTTTATAAGAGGCCTTGGCATTCTGGTGGGTTTGATGGACTTGGGTAA 2718 0.4029 MESPAVAILPAKRPSSGFEAEKHKRMKPSSYSTPYSAHKDDKIELKTPKNSSNVVDYSNPYAITDLLDSLNHGKFGSVTKEIENLIARKMQTLSPIFAKNPTLLRLMEVGINHNEETDKVKNQQVHDLAHKKIIDLVDEHPAKDAPKASLSVVIIDSDEEDDRDQKPYLPFQQVILPQPAGQSTIKDIVEYHAPSAYHPPIGFHAGSVDVKPEKWLAGNDSVRKDNGVYIGVQEEDLQVDTKDDGLGDIWREMSMAIECSKDVSVNPLPDEEDEKDGEDCDHSFVLKDDLGYVCRVCGVINRGIETIFEYQYKVKRSTRTYMPDSWNAKERAAPEVSGLKFGEDGLVVRDISAHPRHMKQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFDTWQVEDVPLLDFYSAKADTRAQQLEVLKQWLERKSILFLGYKQFSSIVCDSGTSKLSLSCQEILLKVPSILILDEGHTPRNDNTDMVQSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLRSETSRPIKRRIESRVHVRGVKNNFSELVENTLQNECDFKTKEAVIKDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLTPQQKHEAQKLKHLSRKFKISSVGSAVYLHPKLKPMAEKCAENSAVSDYMMDEKIESIDVEDGVKSKFFLKILNLCESSGEKLLVFSQYLLPLKYLERLAVKSKGWSLGREIFVISGESSFEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAADSPEEEDHETCFKKELISKVWFEWNEYCGFRDFEVQTVDVKQCGDLFLESPLIREDIKVLYKRPWHSGGFDGLG 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1871 905 Pfam SNF2-related domain 381 646 IPR000330 GO:0005524|GO:0140658
Dere10g1871 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 855 IPR027417 -
Dere10g1871 905 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 235 894 IPR044567 GO:0080188
Dere10g1871 905 CDD SF2_C_SNF 689 829 - -
Dere10g1871 905 SMART ultradead3 357 567 IPR014001 -
Dere10g1871 905 Gene3D - 625 871 IPR027417 -
Dere10g1871 905 MobiDBLite consensus disorder prediction 1 39 - -
Dere10g1871 905 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 554 IPR014001 -
Dere10g1871 905 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 872 IPR001650 -
Dere10g1871 905 SMART helicmild6 730 818 IPR001650 -
Dere10g1871 905 Gene3D - 335 596 IPR038718 -
Dere10g1871 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 577 IPR027417 -
Dere10g1871 905 Pfam Helicase conserved C-terminal domain 707 817 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1871 Dere-ChrDere10 32409731 32415570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1871 715 836 RAD5 or RAD16-like Gene Family AT1G11100 36.066 5.77e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere10g1871 SNF2_N 1.8e-21 CL0023