Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1853 ATGAACATGTCTACTGCTAAAACTGTAGTGTCCACTGCAGCATCTGTAGCTGCTTCAGCAATGGTGGTGAGAAGCATAGCCCGTGAATTTGTGCCTGTTCAGCTTCGCTATTTCATCATGAAGAGCATAAGTGGGATCTTCAAATCCTTGTTTGGCCAAATGATAAAACTAACCATTGAAGAAGTAGAAGGCCTTTCAAGAAACCAGATTTACATTGCTGCAGATATCTACTTAGGCTCGAAATTTTCTCTTTCTTCTTCAACCCAGGTTTACAAAGTAAGCCTCCCGGAAAAAGAAGAAAAACCCACTCTTTCAATGGCCAGAAACCAAGAAGCCATTGATGTGTTTCAAGGGGTGAAGTTCAAATGGAGGCAAGTGACCACACAGGTTGAAGCTAAGCAAATGGGGTGGGTAGGACAAGCTTCAATAGTACACTCAGAGACCAGAAGATTTGAGCTTAGTTTTCACAAGAAATACAAAGATATGGTTCTGGAATCATACATTCCATTTATACTGGGAGTGTCAAAGAGCTTGAAACAACAGAAGAAGACCCTGAAACTTCACACTTTGGACTCTGATGGCATGAGAAGAACAAGATCGGATGCATGGAACTCCATAAAGTTGGATCATCCTGCAACTTTTGAGACTCTGGCTATGGATTTGAAGCTGAAGGAGACTATCATGGGAGATCTTGATAGGTTTGTGAGGAGAAGGGAATTCTACAGAAGAGTAGGAAAGGCATGGAAAAGAGGGTATTTGCTGTATGGTCCTCCTGGTACTGGGAAATCAAGCTTGGTGGCTGCCATGGCTAATTACCTTCAGTTTGATGTATATGACTTGGAGCTTAGTGATATTCATTCGAATTCTGAACTGAGGAAGGTGTTGCTTTCAACTGCGAACCGATCTATACTTGTGATAGAAGATATTGATTGTGGTATTGAGTTACAAGATCGACAAAAGGAAGTTCAGCCTCCTAGTAACCCTCTTAGGCTCAACAGAGTGACATTGTCTGGATTGCTGAATTTCATAGATGGATTGTGGTCAAGTTGTGGAGATGAGAGAATAATTATATTCACAACAAACCACATGGACCGGCTTGACCCGGCTCTGCTCCGACCCGGCCGAATGGATGTCCATATCCATATGTCCTACTGCAACCCAAGTGGCTTCACCACATTGGCTGCCAATTACCTTGGTTTAACAGATCACTCACTTTTCCATGAGATCACAGAGCTACTTCCTAAGATTCATGTCACCCCAGCTGAGGAAACGCAATGGAAGCAGGGATGGTCAGTCGGCGTCAACTTTTCTACTGACGAAGTCAACCCAGAGAATGTAGAGCGATATGTAAGCTTCTGA 1359 0.4312 MNMSTAKTVVSTAASVAASAMVVRSIAREFVPVQLRYFIMKSISGIFKSLFGQMIKLTIEEVEGLSRNQIYIAADIYLGSKFSLSSSTQVYKVSLPEKEEKPTLSMARNQEAIDVFQGVKFKWRQVTTQVEAKQMGWVGQASIVHSETRRFELSFHKKYKDMVLESYIPFILGVSKSLKQQKKTLKLHTLDSDGMRRTRSDAWNSIKLDHPATFETLAMDLKLKETIMGDLDRFVRRREFYRRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLQFDVYDLELSDIHSNSELRKVLLSTANRSILVIEDIDCGIELQDRQKEVQPPSNPLRLNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHMDRLDPALLRPGRMDVHIHMSYCNPSGFTTLAANYLGLTDHSLFHEITELLPKIHVTPAEETQWKQGWSVGVNFSTDEVNPENVERYVSF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1853 452 SMART AAA_5 248 386 IPR003593 GO:0016887
Dere10g1853 452 Gene3D - 381 425 - -
Dere10g1853 452 PANTHER BCS1 AAA-TYPE ATPASE 11 422 - -
Dere10g1853 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 421 IPR027417 -
Dere10g1853 452 Pfam ATPase family associated with various cellular activities (AAA) 253 383 IPR003959 GO:0005524|GO:0016887
Dere10g1853 452 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Dere10g1853 452 Pfam Domain associated at C-terminal with AAA 31 126 IPR025753 -
Dere10g1853 452 CDD RecA-like_BCS1 227 382 - -
Dere10g1853 452 Gene3D - 203 380 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1853 Dere-ChrDere10 32245509 32249338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1853 250 382 Calmodulin-binding Proteins AT3G56690 29.787 1.23e-11 65.1