Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1848 ATGGTGTATGCGGATTTTGAAGTTTATGATGGGGCACTGGGATTGGCTTCTTGCTGTTTATATGGTGGCGCTTCATATCAAGCTCAAGAAACTAAACTCAAGAGAGGCGTTGATATTGTTGTTGGAACTCCAGGACACATAAAAGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTCCGCGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTGGATGTTATATACTGCTATAGCAATGGAGGCTGGACAATTATATTCACTGAGACAAAGGAGTCTACTTCTGAGCTTGCAGGGTTGTTGCCTGGTGCACGAGCTTTGCATGGTGATATACACTCAGGTTTATCAATAGTTGAGTTACTTGCAAAAGCTCTAGCCAAGGCTGCTAGTTATACCGAGATAAGAAAAAGATCACTGCTCACTTCCATAGAGAACCATGTTTCATTACTTCTTGAGATTGGAAAACCCATCTTCACCCCCTCTTCTGTATTTGGAGTCATGAGGAGATTCTTGCCTAAGGAGAAGGTTGAAGTAGTGAAGGGTTTTACTATCATTGCAGATGGAAATGGTGCTGTTTTTTATGTCCCAGCTGAAGATGTACCAACATATCTTGCTGGTCAAGAAAATGCTGCTAATAAAAGGATGGAGAGAGTTGCTGCAGAGGGGAAGAGCAAGAAAAGGGAGAAAGAGTAA 732 0.4194 MVYADFEVYDGALGLASCCLYGGASYQAQETKLKRGVDIVVGTPGHIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILDVIYCYSNGGWTIIFTETKESTSELAGLLPGARALHGDIHSGLSIVELLAKALAKAASYTEIRKRSLLTSIENHVSLLLEIGKPIFTPSSVFGVMRRFLPKEKVEVVKGFTIIADGNGAVFYVPAEDVPTYLAGQENAANKRMERVAAEGKSKKREKE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1848 243 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 65 73 IPR000629 -
Dere10g1848 243 Pfam DEAD/DEAH box helicase 10 92 IPR011545 GO:0003676|GO:0005524
Dere10g1848 243 Gene3D - 157 233 - -
Dere10g1848 243 SUPERFAMILY RNA-binding domain, RBD 147 226 IPR035979 GO:0003676
Dere10g1848 243 Pfam GUCT (NUC152) domain 144 229 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dere10g1848 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 104 IPR027417 -
Dere10g1848 243 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 122 IPR014001 -
Dere10g1848 243 CDD GUCT_RH7_like 150 229 - -
Dere10g1848 243 Gene3D - 2 117 IPR027417 -
Dere10g1848 243 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 15 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1848 Dere-ChrDere10 31740701 31742449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1848 13 88 Eukaryotic Initiation Factors Gene Family AT1G72730 38.158 6.53e-10 56.6