Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1841 ATGTCGAATCAGACGGTTATCTCAGAAGGGCCTGCAATACACGAAATCAATAGTCAGAGAACGAATGCTCGATTTGAGATAATTCAAGTTCTGGGTTTGAATAATCATGGCGAAGAGACGGTGACGTCAGTAATCTATATGTCAGACAGCGAACCAGAGGACACGTACGAGGAAGAAGAAGATGGTCGGGTAAATAATAATCCCGCATGTCTTCATCAGAAGTCACTAGAGAATTTAGAGAAGGTGAGAATTCAAGAATCCACAACATGTTCGATATGCTTGGAGGAGATTTCATCAACTGAAGAAGAAGAAGCAGTTCGAATGCCAGAACCTTGTTCTCATGTGTATCACCAGAATTGCATTCTTAAATGGCTGGCCAAGCATGATACTTGTCCTTTGTGTCGCTATCAGATTCCAAGTTAG 423 0.4184 MSNQTVISEGPAIHEINSQRTNARFEIIQVLGLNNHGEETVTSVIYMSDSEPEDTYEEEEDGRVNNNPACLHQKSLENLEKVRIQESTTCSICLEEISSTEEEEAVRMPEPCSHVYHQNCILKWLAKHDTCPLCRYQIPS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1841 140 ProSiteProfiles Zinc finger RING-type profile. 90 135 IPR001841 -
Dere10g1841 140 Pfam Ring finger domain 89 135 IPR001841 -
Dere10g1841 140 MobiDBLite consensus disorder prediction 49 68 - -
Dere10g1841 140 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 51 139 - -
Dere10g1841 140 SUPERFAMILY RING/U-box 78 138 - -
Dere10g1841 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 140 IPR013083 -
Dere10g1841 140 SMART ring_2 90 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1841 Dere-ChrDere10 31519222 31519644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1841 44 139 C3H Transcription Factor Family AT1G14200 33.663 9.78e-15 65.9