Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1838 ATGTTGCGCTGCCATAACACCTCCGCGAATCTCACCGGAAACTGCTCCGACATGACGGTGTTGGAGAGGCAAAGGACGAGGATGAAGTGGCAGCAAGAGCAGCAGGAGCTTCTTCATCACCAAAGCCAGAGCTTCTATGGCGGAAATGAGTCTTCCAATAACAGCGTTTTCTCTTCTATGGCGGAAATGGGTGATTCTGCGCTCGGTGAGGTAGTAGCTAAGTCCATTAAACCTGACCCGGGTTCCGAAACCAGGTGGCCCGACTTGGGTCAGCTCCACATGCCCAGTTTGGGATTCGGGTCTCCAGGCTTTGATGTGAATTCTGCCATTTCAAGAACTTCCATGACAGCCCTTGAAGACTCCAGGGGCAGAGACTCTGTTTCAGCGAAGGAGAAGATGAGCACAGCGTGTGGGAAAGACAGCTTCAAGAAGAGGAAATCCGACAAGTTTCACAGCTCCAAGGTTGTAGCAGAAAGTGGAAGCAAAGAGAAGAAGATGAAAGGAGTTGGAGAAGAATGGGAATCGAAAGTAACAGACCAAAATAGCGGCAAGAACATCACAAACAACAACAGAGAAACATGTGGAGGTACCCCAAAGGACAATTCGAAGGCGTCCGAGGTTCAAAAGCCAGACTACATCCATGTCCGAGCACGTCGAGGTCAAGCCACAGACAGCCATAGCCTAGCAGAACGAGTTAGGAGGGAGAAGATTAGCGAGAGAATGAAGTATTTGCAGGATTTAGTACCAGGTTGCAACAAAATTACAGGGAAAGCTGGAATGCTTGACGAGATCATCAACTATGTTCAGTCTCTTCAACGACAAGTAGAGTTCCTGTCAATGAAATTGGCTGCTGTAAACCCAAGACTTGACTTCAACCTTGATGATCTCTTTTCCAAAGAGGTGTTTGGTGGTTGTGGTCCAAGCTTTTCAACAATGGAGATGGCAGTATCAGACATGAACAACCCAGCAACATATCTTCAGTTCAACTCAGCACAACAACTGGTCTCATCATGTTGTGCATTAGACATCATGGGTATCACAAACCCTACAGAAATAGGGCTTCGAAGGAGCCTCAGTGCTCCTGTTTCCATCCCCGAAACGTTTCTTGACTCCTCCACTTTCACTCAAATTTTACCCTCTTCCACTTGGGAATCTGATTTTCAGAATCTTCCCACTGTGAGTTTTGATCAAGCACGTGCAGCAACATCCTTTCATTCTCAGACTTTTGCAGGTGTAGTTGAAGCTAGCAATCCAAAGATGGAGATGTGA 1269 0.4704 MLRCHNTSANLTGNCSDMTVLERQRTRMKWQQEQQELLHHQSQSFYGGNESSNNSVFSSMAEMGDSALGEVVAKSIKPDPGSETRWPDLGQLHMPSLGFGSPGFDVNSAISRTSMTALEDSRGRDSVSAKEKMSTACGKDSFKKRKSDKFHSSKVVAESGSKEKKMKGVGEEWESKVTDQNSGKNITNNNRETCGGTPKDNSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDDLFSKEVFGGCGPSFSTMEMAVSDMNNPATYLQFNSAQQLVSSCCALDIMGITNPTEIGLRRSLSAPVSIPETFLDSSTFTQILPSSTWESDFQNLPTVSFDQARAATSFHSQTFAGVVEASNPKMEM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1838 422 FunFam Basic helix-loop-helix transcription factor 218 290 - -
Dere10g1838 422 MobiDBLite consensus disorder prediction 138 206 - -
Dere10g1838 422 Pfam Helix-loop-helix DNA-binding domain 225 272 IPR011598 GO:0046983
Dere10g1838 422 MobiDBLite consensus disorder prediction 179 203 - -
Dere10g1838 422 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 121 319 IPR024097 GO:0006355
Dere10g1838 422 Gene3D - 218 292 IPR036638 GO:0046983
Dere10g1838 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 290 IPR036638 GO:0046983
Dere10g1838 422 CDD bHLH_AtBPE_like 211 296 - -
Dere10g1838 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 271 IPR011598 GO:0046983
Dere10g1838 422 MobiDBLite consensus disorder prediction 138 178 - -
Dere10g1838 422 SMART finulus 227 277 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1838 Dere-ChrDere10 31491186 31493420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1838 9 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.223 1.95e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere10g1838 HLH 2.4e-06 No_clan