Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1834 ATGGCGTCCGCTGAAATTGAATACAGGTGCTTTGTTGGTGGGCTCGCATGGGCCACCGACAACGAGGCCCTCGAGAAGGCCTTTTCTGCTTACGGCGAGATCGTCGAATCGAAGGTTATTAACGATCGTGAGACCGGTAGATCAAGGGGGTTCGGATTCGTAACCTTTACCTCAGAGCAGGCCATGAGAGACGCGATCGAGGGGATGAACGGTCAGGATCTCGATGGCCGTAATATTACCGTGAACGAGGCTCAGTCCCGTGGTAGGGGCGGTGGTGGTGGTGGTGGATATGGCAGCGGTGGTGGTGGCGGCGGATATGGTGGCGGTGGTTACAGCCGCGGTGGAGGTGGCTACGGAGGTGGAGGTCGCCGTGAGGGTGGATACAACCGTAACGGTGGAGGTGGCTACGGTGGTAGCGGCGGCGGTGGTTATGGTGGCGGTTATGGCGGTGGACGTGACCGTGGATACGGTGATGGTGGATCTCGTTACTCCAGAGGTGGTGGTGCTTCTGATGGGAGCTGGAGGAATTAA 531 0.5857 MASAEIEYRCFVGGLAWATDNEALEKAFSAYGEIVESKVINDRETGRSRGFGFVTFTSEQAMRDAIEGMNGQDLDGRNITVNEAQSRGRGGGGGGGYGSGGGGGGYGGGGYSRGGGGYGGGGRREGGYNRNGGGGYGGSGGGGYGGGYGGGRDRGYGDGGSRYSRGGGASDGSWRN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1834 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Dere10g1834 176 MobiDBLite consensus disorder prediction 70 104 - -
Dere10g1834 176 Gene3D - 2 120 IPR012677 -
Dere10g1834 176 MobiDBLite consensus disorder prediction 121 176 - -
Dere10g1834 176 SUPERFAMILY RNA-binding domain, RBD 8 136 IPR035979 GO:0003676
Dere10g1834 176 FunFam Glycine-rich RNA-binding protein GRP1A 2 114 - -
Dere10g1834 176 SMART rrm1_1 9 82 IPR000504 GO:0003723
Dere10g1834 176 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 9 167 - -
Dere10g1834 176 CDD RRM2_NsCP33_like 9 84 - -
Dere10g1834 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1834 Dere-ChrDere10 31444663 31445491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1834 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 1.13e-06 45.8