Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1833 ATGGTGGATCATCGGCGAAGCATTGTGTCTTTTGGGTTCTTGTTCTTGTTGCTCTTTCAGTTCACATTTCAACAGATTGAGCCTCTGAGTTCACCCACAGAGCGAGCTGCCCTACTTGAACTTCGATCTTCCTTGGGGTTGAGAAGCAGGGAATGGCCAATAAAAGCCGACCCCTGCTTAATCTGGAATGGTGTGAGCTGTGAGAATGGTAGAGTCATTGTGATCAATATTTCTGGGTTTACAAGAACCCGAATTGGGAGGCGAAACCCACAATTATCTATTGATGCTTTGGCCAATTTGACCCTCCTGCAATCTTTTAATGCCTCCAAGTTTCTTCTTCCTGGTCCTATTCCTGACTGGTTTGGCCCAAAGCTTTCATCACTTAGAGTGCTTGATCTTCGTTCTTGCTCTATCAATGGTGCAATTCCTTCTAGTCTTGGGAATCTAACAAGCCTAACTAGTCTGTATTTATCTGATAATAACCTTACTGGGATAATTCCTAGTAGTCTAAGTCAACTGTCAGGCCTTTCTGTTCTTGATCTTTCCCGGAATTCTTTCACTGGGTTCTTACCATCATCCTTTGCTTTTCTTGGGAATCTTTCTTTCCTTGACCTTTCTTCCAACTATTTATCCGGGTCGATTCCCCAAGGAATTGGGGCACTTTCAAAGTTACAATACTTGAATCTTTCCAGCAACAGTCTAACTGCTTCTATACCTGCTCAACTTGGGGATCTTAGTAGCTTAGTTGACCTTGATCTAAGTGAGAATTCCTTTTCTGGTTTGGTGCCTACGGATTTAATGGAGTTGAGGAGCTTGCAGAGACTGATGCTTGGGAACAACATTCTTGATGGGCCTTTGCCAGAGAACTTGTTTCCTACTTCATCACAGTTGCAGTTCGTAGAGCTGAGACAAAATAATTTTACTGGGGCTTTGCCTGATAAGTTGTGGTCTCTGCCAAGACTGAGCTTTCTCGATGTTTCTGGGAATAACTTCACTGGTGTGCTTCCTAATTCTAGTTTTACTGTTAATGCTTCTACTGCTGTGGAGCTCAATATTTCTCATAATCTTTTTTATGGAGGCATCACTCATCTCCTCCAAAGGTTCAGTTTCATTGATCTGTCGAGCAATTACTTTGAGGGCAAGACTCTGGATTTTGCACTAAATGCATCTCTGGGTAGCAACTGCCTCCAAAACATATCAAATCAGAGATCGACAGTGGAATGTGCATCATTCTATTCTGAGAGGGGCCTCAATTTTGATAATTTTGGGCGCCCGAATATGACAGGACCTCGTGCAGCAGAAAGCTCAGGGAAGAGCAACAAAAGAAAGATTATATTAGCAGGAGTCTTGGGTGGAGTTGCTTTGATTGCACTTTTGGTGTTGCTACTGGTATTTTTGCTTCAGTGTACTCGTAAGAGGGGTAATTCAAATAAAAAAGGGGTTGGTGTGGGCACTGCTGCTGGAGGTAGCCCTGCACCTCCTTATGTATCAATAAACTTTTCAAAAGTAGGAGACTCATTTACATATCAACAGCTGCTCAAGGCCACAGGTGATTTCAGTGATGCAACTTTTATAAAACATGGCCACACGGGTGATCTCTTTAATGGTGTTTTGGAAAGTGGGATATCTGTAGTCGTAAAAAGGATTGATGCGCATTCAACTAAAAATGAGAGTGCTTACATTTCGGAATTGGACTTTTTCAGTAAGGTTTCTAATCCAAGAATGGTTCCCCTGCTGGGTCATTGCCTAGAAAATGAGAATGAGAAATTCCTGGTTTATAAACATATGCCAAATGGAGACTTGTTGAGTTGCTTGTACAACCGGAAAACTACATCCGAAGATGGTAAGTTGCAGTCATTGGATTGGATAACAAGGTTAAAAATTGCTATCGGAGCAGCAGAGGCCCTATCTTATCTGCATCATGAATGCCATCCTCCCCTTATTCACAGAGATATTCAAGCAACTAGTGTACTTCTAGATGATAAATACGAAGTTCGGTTAGGGAGTCTAAGTGAAGCCTGCACTCAAGAAGAGGATACTCATCAAAGCAAAATCACGAAGTTGCTACGGTTTCCACAGTCATCTGATCAAGGCACATTCGGTTCATCAACATCGGTTTGTGCCTATGATATCTATTGCTTTGGGAAAGTATTGCTTGAGATGATAACTGGTAAACTAGGACTTAGTGCATCTGGTGATGCCGAAGTAAAAGAATGGTTGGAACAGACACTACCTTACATTAGTATTTATGACAAGGAGCTTGTGACAAAGATTGTGGATCCGTCCATGGTTGTTGATGAGGATTTCTTAGACGAAGTGTGGGCAGTGGCTATCGTTGCAAGGTCTTGCCTGAATCCTAAACCTTCCAGAAGACCCCAGATGAAATATGTCCTCAGGGCTCTAGAAAACCCTTTAAAAGTCATAAGGGAAGAGAATTACAGTTCTGCAAGGCTTAGAACAACCTCTTCTAGAGGCTCTTGGAATGCTGCCTTTTTTGGTAGTTGGCGTCAGAGTTCTTCAGATATAACAGTAATTCCAGTAGCCTGTGGTGCAAGAATTGAAGAAGGCGATTTTTCATCGTCTCGTAGGCGTCAATCAAATGACATATTCCCAGAACCATCGAGCAGCATTCAAGAAGTAGAGAAGCTGGAGTAA 2655 0.423 MVDHRRSIVSFGFLFLLLFQFTFQQIEPLSSPTERAALLELRSSLGLRSREWPIKADPCLIWNGVSCENGRVIVINISGFTRTRIGRRNPQLSIDALANLTLLQSFNASKFLLPGPIPDWFGPKLSSLRVLDLRSCSINGAIPSSLGNLTSLTSLYLSDNNLTGIIPSSLSQLSGLSVLDLSRNSFTGFLPSSFAFLGNLSFLDLSSNYLSGSIPQGIGALSKLQYLNLSSNSLTASIPAQLGDLSSLVDLDLSENSFSGLVPTDLMELRSLQRLMLGNNILDGPLPENLFPTSSQLQFVELRQNNFTGALPDKLWSLPRLSFLDVSGNNFTGVLPNSSFTVNASTAVELNISHNLFYGGITHLLQRFSFIDLSSNYFEGKTLDFALNASLGSNCLQNISNQRSTVECASFYSERGLNFDNFGRPNMTGPRAAESSGKSNKRKIILAGVLGGVALIALLVLLLVFLLQCTRKRGNSNKKGVGVGTAAGGSPAPPYVSINFSKVGDSFTYQQLLKATGDFSDATFIKHGHTGDLFNGVLESGISVVVKRIDAHSTKNESAYISELDFFSKVSNPRMVPLLGHCLENENEKFLVYKHMPNGDLLSCLYNRKTTSEDGKLQSLDWITRLKIAIGAAEALSYLHHECHPPLIHRDIQATSVLLDDKYEVRLGSLSEACTQEEDTHQSKITKLLRFPQSSDQGTFGSSTSVCAYDIYCFGKVLLEMITGKLGLSASGDAEVKEWLEQTLPYISIYDKELVTKIVDPSMVVDEDFLDEVWAVAIVARSCLNPKPSRRPQMKYVLRALENPLKVIREENYSSARLRTTSSRGSWNAAFFGSWRQSSSDITVIPVACGARIEEGDFSSSRRRQSNDIFPEPSSSIQEVEKLE 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1833 884 SMART LRR_typ_2 269 293 IPR003591 -
Dere10g1833 884 SMART LRR_typ_2 221 245 IPR003591 -
Dere10g1833 884 SMART LRR_typ_2 318 341 IPR003591 -
Dere10g1833 884 SMART LRR_typ_2 197 220 IPR003591 -
Dere10g1833 884 SMART LRR_typ_2 149 172 IPR003591 -
Dere10g1833 884 SMART LRR_typ_2 125 148 IPR003591 -
Dere10g1833 884 SMART LRR_typ_2 173 196 IPR003591 -
Dere10g1833 884 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515
Dere10g1833 884 Pfam Leucine rich repeat 223 280 IPR001611 GO:0005515
Dere10g1833 884 ProSiteProfiles Leucine-rich repeat profile. 151 172 IPR001611 GO:0005515
Dere10g1833 884 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Dere10g1833 884 PRINTS Leucine-rich repeat signature 200 213 - -
Dere10g1833 884 PRINTS Leucine-rich repeat signature 221 234 - -
Dere10g1833 884 Gene3D Ribonuclease Inhibitor 293 388 IPR032675 -
Dere10g1833 884 SUPERFAMILY Protein kinase-like (PK-like) 494 801 IPR011009 -
Dere10g1833 884 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Dere10g1833 884 Gene3D Transferase(Phosphotransferase) domain 1 596 821 - -
Dere10g1833 884 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 265 811 IPR046959 -
Dere10g1833 884 MobiDBLite consensus disorder prediction 857 884 - -
Dere10g1833 884 Gene3D Phosphorylase Kinase; domain 1 495 595 - -
Dere10g1833 884 SUPERFAMILY L domain-like 104 376 - -
Dere10g1833 884 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 31 190 - -
Dere10g1833 884 Pfam Protein tyrosine and serine/threonine kinase 525 800 IPR001245 GO:0004672|GO:0006468
Dere10g1833 884 FunFam Putative LRR receptor-like serine/threonine-protein kinase 596 821 - -
Dere10g1833 884 FunFam Leucine-rich repeat receptor protein kinase EMS1 191 289 - -
Dere10g1833 884 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Dere10g1833 884 ProSiteProfiles Protein kinase domain profile. 519 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1833 884 FunFam Predicted protein 489 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1833 Dere-ChrDere10 31428442 31432321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1833 33 693 Miscellaneous Gene Families AT2G16250 57.485 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Dere10g1833 PK_Tyr_Ser-Thr 8.4e-22 CL0016