Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1822 ATGTCTTCAAGTTCGGATTCGAGTTCTCCGCCTTCGCCTGACTCATCTTCATCGGAATCCCCTCCGCCGCCACCGGATTCAAACGATTCTTCTTCATCCGGTAATTCCCCTTCCTCCTCACCCTCGTCGCCGCCGCCGCCGCCGCCGTCGTCTTCACCACCACCCCAGTCCCCGCCGCCGAAGTCTCCTCCACCTCCGTCGTCTTCACCACCACCCCAGTCCCCGCCGCCTTCATCCCCACCACCGCCATCTGATGACGATAACCACCAACCACCCCCATCGCCCCCACCACCATCCGGCCAAAACAATGATGGAGACAATAATAAAAACTCTTCTCCCTCGCCACCTCCACCTTCAAATAACAATAATAATGGTGGAAATAATAACAGACCGCCAAGCCCTCCGCCGCCAGCTCCGTCGTCAAATTCCAACGGAGTGTTTTCACCGCCGCCACCGCCACGCCGATTGTCTCCGCCGGGACAAAGTTCAAAACCCGGGTCATCGAATCATCCACCACCGTCATCAGGGAGCGACAATGATGGATCCCAACTGAGCGTACCAGTCATTATTGCGGTAGCTGCTGGAGCTGGCATGTTCCTTCTTGTGATCATACTCATCTTCGTTGCATGTTCAAGAAGGAAGAAATCTCAGGGTCCCATTATTTACTACGCCAACAAAAATGATAAAGACTATTACAAGCACGGAAAGAAAGGAAACAAATGGAACAAAGGGTACAACGACCAACACGTTCTCAACATCCCACCACCGCCGGGAGGAGGAGCAGCAGGAGGCATGAAGAACGGGTGGGGGGCGCCGGCGCCTTTATCGGGAAACATGGTGAGCGGCGACATGAGCACCTCCAGCTACTCGGGGCCCGTGGGTCCCGTACTCCCACCCCCACACCCAACCGTGGCTCTGGGCTTCAACAAGAGCACCTTCTCCTACGAGGAGCTAGCCGCTGCGACCAGCGGCTTCTCCCAGGCTAACCTTCTGGGTCAGGGTGGGTTCGGCTACGTCCACAAGGGCGTGCTGCCCAACGGCAAGGAGATCGCCGTCAAGAGCCTCAAGTCCACCGGCGGCCAAGGAGACAAGGAGTTCCAAGCCGAGGTTGATATCATTAGCCGCGTCCATCATCGCCATCTTGTTTCGCTAGTTGGCTATTGCCTTCAAGATGGTCGGAATCTCTTGGTCTATGAGTTTGTGCCAAACAAGACTCTGGAATACCATCTTCACGGAAAGGGTCGACCTGTCATGGATTGGGGCACTAGGCTCAAAATAGCAATTGGATCAGCCAAGGGACTTGCTTACTTGCATGAAGATTGCCACCCTCGAATCATTCACCGTGACATAAAGGGCGCAAACATTCTAATTGAAAACAACTTTGAAGCCAAGGTGGCAGATTTTGGATTGGCAAAGTTTACTCTGGACAACAACACTCATGTTTCCACTCGTGTAATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCTTCAAGTGGCAAGCTAACCGAGAAGTCTGATGTCTTCTCATATGGTATTATGCTTCTAGAGCTCATAACAGGACGACCTCCCGTGGACAACGCTGGAGAATACGAGGAGGACAGTTTAGTTGACTGGGCTAGGCCTCTTTGTATGAAGGCCATGGAAAGTGGAAGCTTTGAAGGACTAGTGGATCAGCGATTGGGGAACAATTATGATATGCAGGAGATGGCACGTATGGTGGCCTGTGCTGCTGCCTCTGTCAGGCACTCAGCAAGAAGACGACCAAAAATGAGCCAAATTGTACGAGCACTGGAGGGTGATGTGTCACTGGATGACCTGAGCGAGGGAGTGAAGCCAGGCCAAAGTTCGATGTTCAGCAACACCAGCATTGAGTACGATGCTAGCACGTACAGTGCAGACATGAAGAAGTTCAGAAAGCTAGCATTCGATAGTGGCTATGCAAGCAGCGAGTGTGGCCAAACCAGCGAGTATGGGCTCAACCCTTCGTCCTCAAGCAGTGACCAGTCTTCTGAATATGGCAGAAGAAAATAA 2034 0.528 MSSSSDSSSPPSPDSSSSESPPPPPDSNDSSSSGNSPSSSPSSPPPPPPSSSPPPQSPPPKSPPPPSSSPPPQSPPPSSPPPPSDDDNHQPPPSPPPPSGQNNDGDNNKNSSPSPPPPSNNNNNGGNNNRPPSPPPPAPSSNSNGVFSPPPPPRRLSPPGQSSKPGSSNHPPPSSGSDNDGSQLSVPVIIAVAAGAGMFLLVIILIFVACSRRKKSQGPIIYYANKNDKDYYKHGKKGNKWNKGYNDQHVLNIPPPPGGGAAGGMKNGWGAPAPLSGNMVSGDMSTSSYSGPVGPVLPPPHPTVALGFNKSTFSYEELAAATSGFSQANLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDKEFQAEVDIISRVHHRHLVSLVGYCLQDGRNLLVYEFVPNKTLEYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILIENNFEAKVADFGLAKFTLDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGIMLLELITGRPPVDNAGEYEEDSLVDWARPLCMKAMESGSFEGLVDQRLGNNYDMQEMARMVACAAASVRHSARRRPKMSQIVRALEGDVSLDDLSEGVKPGQSSMFSNTSIEYDASTYSADMKKFRKLAFDSGYASSECGQTSEYGLNPSSSSSDQSSEYGRRK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1822 677 CDD STKc_IRAK 331 600 - -
Dere10g1822 677 MobiDBLite consensus disorder prediction 650 670 - -
Dere10g1822 677 SMART serkin_6 325 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1822 677 ProSiteProfiles Protein kinase domain profile. 325 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1822 677 Gene3D Phosphorylase Kinase; domain 1 302 400 - -
Dere10g1822 677 MobiDBLite consensus disorder prediction 1 181 - -
Dere10g1822 677 SUPERFAMILY Protein kinase-like (PK-like) 305 598 IPR011009 -
Dere10g1822 677 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Dere10g1822 677 MobiDBLite consensus disorder prediction 650 677 - -
Dere10g1822 677 FunFam Proline-rich receptor-like protein kinase PERK1 401 609 - -
Dere10g1822 677 MobiDBLite consensus disorder prediction 160 181 - -
Dere10g1822 677 MobiDBLite consensus disorder prediction 129 159 - -
Dere10g1822 677 Pfam Protein tyrosine and serine/threonine kinase 328 598 IPR001245 GO:0004672|GO:0006468
Dere10g1822 677 MobiDBLite consensus disorder prediction 39 100 - -
Dere10g1822 677 FunFam proline-rich receptor-like protein kinase PERK1 303 400 - -
Dere10g1822 677 Gene3D Transferase(Phosphotransferase) domain 1 401 609 - -
Dere10g1822 677 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 195 649 IPR047117 -
Dere10g1822 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1822 Dere-ChrDere10 31289012 31294286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1822 166 675 Trihelix Transcription Factor Family AT1G70460 48.851 7.48e-155 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere10g1822 PK_Tyr_Ser-Thr 1.2e-44 CL0016