Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1798 ATGGAGGACTATATGAGCAGCGACGACGATTACCAATACTCCGATCGGGAGTCCGTTGATGGCTTTGTAAAGGAGGAGGACCCCGAAATTGAGCTGTTCGCTCCCAAGGGTCCCACAACGAAGTTGATTACAAAGGAATCACTTCTGGCAGCACAGAAAGAGGATTTGCACAGAGTGATGGACATGCTATCAGTGAAAGAGCGCCATGCACGTACACTTCTTATTTATCATCGGTGGGATGTGGAGAATTTGTTTGCAGTGTACGTGGAAAAGGGGAAAACTTTATTGTTCGCTGAAGCTGGTGTTAGTGAGAAAGAACATTGTGATGCAGGCTCATCAGTTCCTTCTTCAGTAATGTGTGAAATCTGCATAGAGGATGTTCCCGGTCATGAAGCAACAAGAATGGACTGTGGTCACTGTTATTGCAACAACTGTTGGACAGAACATTTCATCGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGGTGCATGGCACACAAATGCAATGCTATTTGTGATGAAGATGTTATAAGGACTCTAGTCAGCCAAAAGAACCCTAATACGGCTGAGAAGTTTGAACGTTTTATTCTTGAATCCTACATTGAAGACAATAAACGAGCTAAATGGTGTCCCAGCACTCCTCATTGTGGGAATGCAATCTGTGTTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTTCAATTCTGTTTCAGTTGTTTGTCACAAGCACACTCTCCATGTTCATGTTTGATGTGGGAGCTTTGGGCTAAAAAGTGTCAAGATGAATCAGAAACTATCAATTGGATAACAGTTAATACGAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAACGGTGGTTGCAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGCCGGGAACATACTTGGACCACTATAGCAGGTCATAGCTGTGGTCGCTACAAAGACCAAGAGGAAAAGGCTGAAAGGGCAAAGCGGGACCTATGCCGGTATGTGCACTATCATAACCGTTATAAAGCTCACATGGACTCCTTCAAACTTGAAAGTAAACTGAAAGAATCCATAGCAAAGACGATTGCTATTTCAGAAGAGAGGGATTCTAACCTCAGGGACTATAGCTGGGTAAATAATGGTCTCTCCAGACTTTTCAGGTCTAGGCGTGTCCTATCATATTCATATCCATTTGCATTTTATATGTTTGGAGAGGAGCTATTTAAAGATGAAATGTCAGACACGGAAAGGGTAATAAAACAGAACTTATTCGAGGATCAGCAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCCAAAATTTTGGAGGAGCCCTTTAATCGGTTTAAAGATGAAAAGGTTATGGAGATAAGGATGCAGGTTATCAATCTGTCTACAGCAATTGACAAATTCTGTCAGAGAATGTATGAATGCATTGAGAATGAATTATTGGGTTCTCTCTCACTTGGCATTCACAGTATAGCTCCATACAAGTCAAAGGGCATAGAGAGGGCATCAGAACTTTCAATTTGTCAGAGTAATGAAGCCAATAATACTGGTGGAACAGCAGGACTTGATCGCCCTTGTGGTTCCAGAAGTTCAGGTGAGAGTGAATGTTCTCATAAGCGTGCTCGAAAAGAGGGTCATGGAGGTGGCCATTTTGATCTAAATTTGCCAGCAGAACTTGCAGACAGAAATCGATTCTGA 1743 0.428 MEDYMSSDDDYQYSDRESVDGFVKEEDPEIELFAPKGPTTKLITKESLLAAQKEDLHRVMDMLSVKERHARTLLIYHRWDVENLFAVYVEKGKTLLFAEAGVSEKEHCDAGSSVPSSVMCEICIEDVPGHEATRMDCGHCYCNNCWTEHFIVKINEGQSKRIRCMAHKCNAICDEDVIRTLVSQKNPNTAEKFERFILESYIEDNKRAKWCPSTPHCGNAICVEDDELCEVECSCGFQFCFSCLSQAHSPCSCLMWELWAKKCQDESETINWITVNTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWTTIAGHSCGRYKDQEEKAERAKRDLCRYVHYHNRYKAHMDSFKLESKLKESIAKTIAISEERDSNLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGEELFKDEMSDTERVIKQNLFEDQQQQLEANVEKLSKILEEPFNRFKDEKVMEIRMQVINLSTAIDKFCQRMYECIENELLGSLSLGIHSIAPYKSKGIERASELSICQSNEANNTGGTAGLDRPCGSRSSGESECSHKRARKEGHGGGHFDLNLPAELADRNRF 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1798 580 MobiDBLite consensus disorder prediction 528 569 - -
Dere10g1798 580 SMART ibrneu5 191 253 IPR002867 GO:0008270
Dere10g1798 580 SMART ibrneu5 261 326 IPR002867 GO:0008270
Dere10g1798 580 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Dere10g1798 580 MobiDBLite consensus disorder prediction 548 564 - -
Dere10g1798 580 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
Dere10g1798 580 SUPERFAMILY RING/U-box 191 259 - -
Dere10g1798 580 SUPERFAMILY RING/U-box 261 318 - -
Dere10g1798 580 Pfam Ariadne domain 330 578 IPR045840 -
Dere10g1798 580 Gene3D - 249 496 - -
Dere10g1798 580 SUPERFAMILY RING/U-box 117 203 - -
Dere10g1798 580 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 56 406 IPR031127 GO:0004842|GO:0016567
Dere10g1798 580 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270
Dere10g1798 580 FunFam RBR-type E3 ubiquitin transferase 249 496 - -
Dere10g1798 580 CDD Rcat_RBR_ARI1-like 274 327 - -
Dere10g1798 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 206 IPR013083 -
Dere10g1798 580 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Dere10g1798 580 CDD RING-HC_RBR_TRIAD1 118 171 - -
Dere10g1798 580 CDD BRcat_RBR_ANKIB1 198 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1798 Dere-ChrDere10 31028966 31032864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1798 60 545 ARIADNE family AT2G16090 71.837 0.0 736