Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1781 ATGCCGCGACCTTGTTTTTACAAGCTTATTTCCCCCTCCACGCTTCAATCTAGGCAGCTGAATATTCCAGATAATTTTCTGAGAAAATTTGGGGGTGAGCTTTCTACAGTTGCTACCCTTACTGTTCCTGATGGCAGTGTCTGGCGTATAGGATTAAAAAAGGTGGGCAACAAATTTTGGTTCCTTGATGGCTGGCAGGAATTTGTTCAACGCTACTCCATTGGCGTTGGATACTTGTTAGTATTCAGATATGAAGGGAAATCATCATTCAATATTCATATTTTCAATTTGGCTACTTCTGAGATAAATTACCAATCAAGCACACGAAGCAGTAATGAAGGGACTTACTTTGCAAATCAACATCTTAATTTTGACGATATTGAAGATGAAGACTCCATTGAATTATTGGATTCATCAACTTCGTCCCTTGCTTCTGGTGGTGCATTGCAAAACAAGGTTCTTGCTGGATCTGTAGATCAAGTGACACCTGGCAAGAATTATACTTCTCCAGCATTGCAGAATTTGTTCAATGGATCTAAACTTAATTGCATAAACTGGGGAGACGGTGGGAATGCACTTTCTTCTAAGGGTGCCAATTCACATGACAATCAGTCAAGCAGAAATATAGGCGTTCAGTTCAATGCAGTTGAGTTTAAAAGGTCTACTGAGGAATTAAAATTGCGTTTTTCTAATGAGGAAATGCAAAGAGTTAAAAAAACTATAAGAAAGAAGCGGAAAATGGACCCAAATGGACAGGAACCCTCCGCTCAACATGAAGAGGAGGCAGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCAAGGAAAAGAACTGTGACAGCTGAAGAAAGAGAGAGGGCCATTAATTCAGCAAAAGCATTTGAGCCAGCTAATCCTTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATATAGGGGTTGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGGGGTTTCAGGATTCATCAAACTCCAGATTTCTGATGGAAAACAGTGGCCTGTTCGCTGTCTTTACAGAGGAGGTAGAGCAAAGTTAAGTCAAGGGTGGTTTGAATTTTCGTTGGAAAACAATTTAGGCGAAGGTGATGTCTGCGTTTTTGAACTGCTTCGAATGAAGGATGTAGTGCTGAAAGTTACTGTATTTCGAGTCATGGAGGATGCAGGATTGATGAGCCCTCCTATGCATCAACACCAAAACGTCAGCCCAGCCAAATTGTTGAATACTCCTATGCAGCAAAACGTGATCCAAACCAAACTGATAAGAAACTAG 1305 0.4077 MPRPCFYKLISPSTLQSRQLNIPDNFLRKFGGELSTVATLTVPDGSVWRIGLKKVGNKFWFLDGWQEFVQRYSIGVGYLLVFRYEGKSSFNIHIFNLATSEINYQSSTRSSNEGTYFANQHLNFDDIEDEDSIELLDSSTSSLASGGALQNKVLAGSVDQVTPGKNYTSPALQNLFNGSKLNCINWGDGGNALSSKGANSHDNQSSRNIGVQFNAVEFKRSTEELKLRFSNEEMQRVKKTIRKKRKMDPNGQEPSAQHEEEAEMRYRFYESASARKRTVTAEERERAINSAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKDVVLKVTVFRVMEDAGLMSPPMHQHQNVSPAKLLNTPMQQNVIQTKLIRN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1781 434 MobiDBLite consensus disorder prediction 242 261 - -
Dere10g1781 434 Pfam B3 DNA binding domain 304 394 IPR003340 GO:0003677
Dere10g1781 434 Pfam B3 DNA binding domain 8 95 IPR003340 GO:0003677
Dere10g1781 434 ProSiteProfiles B3 DNA-binding domain profile. 301 396 IPR003340 GO:0003677
Dere10g1781 434 SUPERFAMILY DNA-binding pseudobarrel domain 294 394 IPR015300 -
Dere10g1781 434 Gene3D - 278 398 IPR015300 -
Dere10g1781 434 CDD B3_DNA 4 96 IPR003340 GO:0003677
Dere10g1781 434 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Dere10g1781 434 MobiDBLite consensus disorder prediction 246 261 - -
Dere10g1781 434 CDD B3_DNA 299 394 IPR003340 GO:0003677
Dere10g1781 434 Gene3D - 1 98 IPR015300 -
Dere10g1781 434 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Dere10g1781 434 PANTHER B3 DOMAIN-CONTAINING 3 384 - -
Dere10g1781 434 SMART B3_2 301 396 IPR003340 GO:0003677
Dere10g1781 434 SMART B3_2 6 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1781 Dere-ChrDere10 30916126 30919201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1781 1 400 B3 DNA Binding Superfamily AT3G18990 52.346 1.40e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere10g1781 B3 5.7e-16 CL0405