LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g1768	ATGGATCGGTCGGCGATCACAGTTGGTCCGGGAATGGATTTGCCGATTATGCACGACAGCGACCGCTATGAGCTCGTGCGTGATATTGGGTCTGGAAATTTTGGGGTCGCGAGGCTTATGAGAGACAAGCAGACAGATGAGCTCGTTGCTGTTAAGTATATAGAGAGGGGGGATAAGATAGATGAAAATGTGCAAAGGGAAATCATAAATCACAGATCACTTAGGCATCCCAACATTGTCAGGTTCAAGGAGGTCATCTTGACACCAACACATTTGGCTATAGTGATGGAATATGCCTCTGGAGGAGAACTATTTGAACGAATATGCAATGCTGGGCGGTTCAGTGAGGATGAGGCCCGTTTCTTTTTCCAACAACTTATTTCAGGAGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGACGGTAGTTCAGCTCCTCGTCTGAAGATATGTGATTTTGGGTACTCCAAGTCCTCAGTGCTACATTCGCAACCAAAATCTACTGTTGGTACTCCGGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTATGGTCTTGTGGGGTGACCTTGTATGTCATGTTGGTGGGTGCTTATCCTTTTGAGGACCCAGAGGAACCAAAAAATTTCCGCAAGACAATACATAGGATTCTGAATGTCCAGTACTCAATTCCTGACTATGTTCATATATCTCCCGAGTGTCAACATCTGATCTCAAGGATCTTTGTTGCTGACCCTGCAAAGAGGATAACCATCCCTGAGATTAGAAACCACGAATGGTTTCTAAAGAACCTTCCAGCTGATCTCATGGATGATCACAGTACAACGAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAGAGCATAGAGGAAATCATGCAGATAATTGCTGAAGCTACAATTCCTGCAGCTGGGACTCAGTCTCTTAACCGCTATCTTACTGGTAGCCTGGACATTGACGATGACATGGAGGAGGATCAGGAGACTGATCCTGATCTCGATATCGATAGCAGTGGAGAAATAGTCTATGCAATGTAA	1095	0.4475	MDRSAITVGPGMDLPIMHDSDRYELVRDIGSGNFGVARLMRDKQTDELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECQHLISRIFVADPAKRITIPEIRNHEWFLKNLPADLMDDHSTTNNQFEEPDQPMQSIEEIMQIIAEATIPAAGTQSLNRYLTGSLDIDDDMEEDQETDPDLDIDSSGEIVYAM	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g1768	364	SMART	serkin_6	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g1768	364	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
	Dere10g1768	364	PANTHER	SERINE/THREONINE KINASE	22	310	-	-
	Dere10g1768	364	ProSiteProfiles	Protein kinase domain profile.	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g1768	364	Pfam	Protein kinase domain	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g1768	364	Gene3D	Phosphorylase Kinase; domain 1	1	98	-	-
	Dere10g1768	364	FunFam	Serine/threonine-protein kinase SRK2E	14	98	-	-
	Dere10g1768	364	FunFam	Serine/threonine-protein kinase SRK2E	99	287	-	-
	Dere10g1768	364	CDD	STKc_SnRK2-3	22	278	-	-
	Dere10g1768	364	Gene3D	Transferase(Phosphotransferase) domain 1	99	287	-	-
	Dere10g1768	364	ProSitePatterns	Protein kinases ATP-binding region signature.	29	52	IPR017441	GO:0005524
	Dere10g1768	364	SUPERFAMILY	Protein kinase-like (PK-like)	16	315	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g1768	Dere-ChrDere10	30746966	30750841	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g1768	16	304	CBL-interacting serine-threonine protein kinases	AT4G24400	42.809	2.04e-71	227

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Dere10g1768		Pkinase	1.3e-72	CL0016