Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1763 ATGTGCTATTCATCGCCTTTTCAATTGACAACCTTCATATTGTCTCGACTTCACGTGACCGCGCGATTAAGCTCTGAAACACTCTTGGTGAGTGCAAGTATACAATTCAAGACAACGATGCACATTCCAATTGGTAGTGGCAAGGATGGTGTGATTTTGCTTTGGGATTTAGCCGGAGGGAAGAGACTGTACTTGCTTGATGCTAGTGCTATCATCCATTCTCTGTGTTTTAGTCCTAACAAGTATTGGCTCTGTGTAGCCATAGAACAGAGCATCAAGATCTGGGATTTTGAGAGTAAGAGCATCGTTGAGGATTTGAGGGTTAACTTGAAGACTGAAGCTGAAAAGGTTAATGGTGCCATTGGTGGCAACAGTACCAAGAAGAAGGTTATCTACCGTACTAGTTTGAACTGGGGCACAGATGAAATCGAAGTAGGAAGCCAGGATGTACGCAAAATTCTTGTTGAAGCTGCGCCAAACGAGGTTTTCAACTCATTTGACAAGGATGAAACACCTGTCGAATCATTACTCCATCCGTGTAAGGTTGCATTCCTTCGAAGAGGTGTTGAACTTCCATCAGGGAGATCTGCATTTGTCTGTAGACGTGTCTATGACATTGAGAACAAGCGTTTATGGTGGTTAACTGATAAAGACTACCTTAATGAACGTCAAAAAAAAGTTAACCAGCTATTAGATGAGACAAGACTAGAAATGCATGGGGCAGTGCAGTCGAGAGGTCGTTCACCAAAATCTTTGAATGGTCCAACATCAACACCATCACTGAAATCTGGTGCTGATCGTGCTCAAAATAGTCCTTTTGGTTCATACGGTAAAGGGAAAAAGAGAGAACGAGTTGATCAGGGATCTAATTCATCCAAAAGAAAGCGGTTAACTAAAACAGAAGACACGGATTTTGATCAATTTAGGCCAGAGAAAATTTTAAAGTCTAAGATTACTAAAATTATTGATAAAGGCGTGCTTGTAGATTTTGAAGGAGTTGAAAGACTGCTTAAGGGATTGCCTGTATTAGATGAATGGCTTCAGGAGGTGCATCAGGGGAAAATTGGTGATGTTAGCATGCCTAAAGAAAGTGATAAGTCTATTGAAGAATTCTTGTTAGCTTTACTTCATTTATTGGATAAGCTCCCCATGAATCTTCATGTACTGCAAATCTGTAATGTTGGAAAGTCTGTCAATAATTTGCGTAGTCACAAAAATTTTGAAATTCAAAAGAAAGCAAGGAGTTTAATTGATACATGGAAGAAATGTGCTGAGGTTGAAATGAATAAAAGTGATGAAAAATTTGGTTCAAACCGGGCCCTTTCTTGGTCAGCAAAGCCAGCACCTTCTGAGGTTTCTCAAACTAGAAATAGGAAAACAGGAGGATCTATTGAGGTCACTGCAAGGTGCTTTGCAATGCAAAGCATGGCATTTAAAAGTTCCCAAGCTAAGCCTAGCACTAGAGAAGCATTGTCTAAATCCTCTTAA 1488 0.4012 MCYSSPFQLTTFILSRLHVTARLSSETLLVSASIQFKTTMHIPIGSGKDGVILLWDLAGGKRLYLLDASAIIHSLCFSPNKYWLCVAIEQSIKIWDFESKSIVEDLRVNLKTEAEKVNGAIGGNSTKKKVIYRTSLNWGTDEIEVGSQDVRKILVEAAPNEVFNSFDKDETPVESLLHPCKVAFLRRGVELPSGRSAFVCRRVYDIENKRLWWLTDKDYLNERQKKVNQLLDETRLEMHGAVQSRGRSPKSLNGPTSTPSLKSGADRAQNSPFGSYGKGKKRERVDQGSNSSKRKRLTKTEDTDFDQFRPEKILKSKITKIIDKGVLVDFEGVERLLKGLPVLDEWLQEVHQGKIGDVSMPKESDKSIEEFLLALLHLLDKLPMNLHVLQICNVGKSVNNLRSHKNFEIQKKARSLIDTWKKCAEVEMNKSDEKFGSNRALSWSAKPAPSEVSQTRNRKTGGSIEVTARCFAMQSMAFKSSQAKPSTREALSKSS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1763 495 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 369 436 IPR035441 -
Dere10g1763 495 Pfam TFIIS helical bundle-like domain 375 422 IPR017923 -
Dere10g1763 495 ProSiteProfiles BAH domain profile. 99 215 IPR001025 GO:0003682
Dere10g1763 495 MobiDBLite consensus disorder prediction 246 270 - -
Dere10g1763 495 SUPERFAMILY WD40 repeat-like 47 106 IPR036322 GO:0005515
Dere10g1763 495 Gene3D - 151 323 IPR043151 -
Dere10g1763 495 ProSiteProfiles TFIIS N-terminal domain profile. 341 427 IPR017923 -
Dere10g1763 495 MobiDBLite consensus disorder prediction 239 302 - -
Dere10g1763 495 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 347 437 IPR035441 -
Dere10g1763 495 Gene3D - 25 150 IPR015943 GO:0005515
Dere10g1763 495 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 151 337 - -
Dere10g1763 495 MobiDBLite consensus disorder prediction 277 302 - -
Dere10g1763 495 SMART TFS2_5 347 426 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1763 Dere-ChrDere10 30705668 30707389 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere10g1763 Med26 2.6e-11 No_clan