Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1761 ATGGGCAAAGCCTGTGTACGGCTCAAGCAAGCAAATAACAGAAGAGAGAGAGGCGCAAAGTTGATAAATTGGTGGCGTTTGAAATTGGAAGTGAGAGCAGAAGGAAGGGGTGTGAGTGAGAGGAGAGAGAGGGGGAAAGACACAGAGATGGGGAGACCAAGGTGCTTCTTAGACATAAGCATAGGGGAAGAGCTAGAAGGGAGGATAGTGGTGGAGCTTTACAACGACGTCGCACCCAAAACTGCTGAGAACTTCAGGGCTCTCTGCACGGGCGAGAAAGGCATTGGTCCTAACACCGGGGTGCCCCTCCATTACAAGGGATGTTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGAGATATATCTGCTGGAGATGGTACTGGCGGTGAATCTATCTATGGGCTGAAGTTTGAAGATGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAATTCTGGCCCTAACACCAATGGGTCTCAGTTTTTCATCACCACTACTCGAACTTCTCCTCTTGATGGCAAGCATGTTATATTTGGGAAAGTAGTAAAGGGAATGGGAGTGGTCCGTTCGATTGAGCATGTTACAACTGGCAATGAAGACCGTCCCACTCTTGATGTTAAGATTGTGGATTCTGGAGAAATTCCTCAAGGAGCAAATGATGGAATATCTAACTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAACAGACCTTGATGAGAGCCCCAGTGATCTTCATTGGTGGATGAATGCCGTAGATTCCATTAAAAGTTTTGGTAACGAGTACTACAAGAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACCTGGATATTTGCTGGGAGAAAGAAGGAATAGATGAAGATAAGAGTTTAAGTTTGAGAAAAACAAAGTCTCAGATTTTTACAAACAGCTCTGCTTGTAAATTGAAGATGGGGGATCTCAAAGGAGCATTATTAGATACAGAATTTGCAATGCGTGAAGGAGACAACAATGTCAAAGCTTTGTTCCGCCAAGGACAGGCATACATGGCGCTCAATGACATTGATGCTGCAGTTGAAAGCTTTAAAAGGGCACTGAACTTGGAGCCAAATGATGCTGGAATCAAAAGGGAATTTGCTGCTGCTAGGAAAAAGATTGCTGATAGACGCAATCAGGAAAAAAAGGCATACCAAAAGATGTTCCAAACTTCCAATAACATTTCTGCTCAGGAACCGCAACCAGGCACCCCAGAAAATACAGGATAA 1290 0.4357 MGKACVRLKQANNRRERGAKLINWWRLKLEVRAEGRGVSERRERGKDTEMGRPRCFLDISIGEELEGRIVVELYNDVAPKTAENFRALCTGEKGIGPNTGVPLHYKGCCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSPLDGKHVIFGKVVKGMGVVRSIEHVTTGNEDRPTLDVKIVDSGEIPQGANDGISNFFKDGDTYPDWPTDLDESPSDLHWWMNAVDSIKSFGNEYYKKQDYKMALRKYRKALRYLDICWEKEGIDEDKSLSLRKTKSQIFTNSSACKLKMGDLKGALLDTEFAMREGDNNVKALFRQGQAYMALNDIDAAVESFKRALNLEPNDAGIKREFAAARKKIADRRNQEKKAYQKMFQTSNNISAQEPQPGTPENTG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1761 429 Gene3D - 42 228 IPR029000 -
Dere10g1761 429 SUPERFAMILY TPR-like 259 410 IPR011990 GO:0005515
Dere10g1761 429 CDD cyclophilin_ABH_like 53 220 - -
Dere10g1761 429 SMART tpr_5 347 380 IPR019734 GO:0005515
Dere10g1761 429 SMART tpr_5 261 294 IPR019734 GO:0005515
Dere10g1761 429 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 105 122 IPR020892 GO:0003755|GO:0006457
Dere10g1761 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 54 222 - -
Dere10g1761 429 MobiDBLite consensus disorder prediction 405 429 - -
Dere10g1761 429 SUPERFAMILY Cyclophilin-like 50 223 IPR029000 -
Dere10g1761 429 FunFam Peptidyl-prolyl cis-trans isomerase D 43 227 - -
Dere10g1761 429 Pfam Tetratricopeptide repeat 347 380 IPR001440 GO:0005515
Dere10g1761 429 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 56 221 IPR002130 GO:0000413|GO:0003755
Dere10g1761 429 ProSiteProfiles TPR repeat profile. 347 380 IPR019734 GO:0005515
Dere10g1761 429 Gene3D Tetratricopeptide repeat domain 257 411 IPR011990 GO:0005515
Dere10g1761 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 122 IPR002130 GO:0000413|GO:0003755
Dere10g1761 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Dere10g1761 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 88 IPR002130 GO:0000413|GO:0003755
Dere10g1761 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 IPR002130 GO:0000413|GO:0003755
Dere10g1761 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 168 180 IPR002130 GO:0000413|GO:0003755
Dere10g1761 429 ProSiteProfiles TPR repeat region circular profile. 347 380 - -
Dere10g1761 429 MobiDBLite consensus disorder prediction 398 429 - -
Dere10g1761 429 FunFam peptidyl-prolyl cis-trans isomerase D 259 410 - -
Dere10g1761 429 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 57 219 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1761 Dere-ChrDere10 30676204 30680297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1761 63 219 U-box Gene Family AT5G67530 44.304 4.28e-35 135