Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1751 ATGGCTCAGCCCACAAACGGTACGGATCTGAATCACCAGCAGCACCAGCAGCAGTGGACGCCGCAGCACCAGCATCACTACCAGCACCAATGGATGGCTATGCAGTACCCTGCTGCTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCGCAACATTACATGCCTTACGTCCACCATTATCCGCCTCCTCCTCACCAGCAGCAGCAGCAGCAGCTCAAGCCGCAGCCGCCACCCTATCAGCCGCAGCAGCAGCAGCAGAAGCAAGTGTCCACTGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACCTCCACAACTGTTTTGCTCATACGGGCGAGGTTTTATCAGCCAAGGTTATACGAAATAAGCAAACTGGTCAGTCAGAGGGGTATGGATTTGTTGAGTTTTATTCGCGCGCAACAGCTGAGAAGATTTTGAACAGCTATAATAATACTATGATGCCAAATACTGATCAGCCCTTTCGTCTGAATTGGGCTACATTCAGTGCCGGTGATAGGAGAACAGATGCAAGTTCTGACCTGTCTATATTTGTTGGGGACTTGGCTGTAGATGTTACTGATGCTATGCTGCAGGAAACCTTTGCTAGTAGATATTCATCTGTTAAGGGAGCAAAAGTTGTCTTTGATTCTAATACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAAATGAGAGGTCTAGGGCTATGACTGAGATGAATGGATTCTATTGTTCAAGTAGGCCTATGCGAGTAGGTGTTGCAACCCCAAAGAAATCCTATGGGTATCAGCAACAGTATTCTTCCCAAGCTGTGGTATTAGCTAATGGACATTCATCTAATGGTGCTACCAACCAAGGTACGCAGCCTGAGGGGGACTTAAGTAACACAACTATTTTTGTTGGAGGGCTTGATTCTGATGTCAGTGATGATGATCTTAGACAACCATTCTTGCAATTTGGTGAGGTTGTCTCTGTCAAAATACCTGTGGGCAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACGGATTCTAACGGAGGTCATCATGGAGGCCATGGGTATGCTATGAGACAAAACCAGGATAACAGTATGAACGTTGCTGCTGCAGTTCAAGGGGCTTCCTGA 1266 0.4692 MAQPTNGTDLNHQQHQQQWTPQHQHHYQHQWMAMQYPAAAMAMMQQQMMMYPQHYMPYVHHYPPPPHQQQQQQLKPQPPPYQPQQQQQKQVSTDEIRTIWLGDLHHWMDENYLHNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYSRATAEKILNSYNNTMMPNTDQPFRLNWATFSAGDRRTDASSDLSIFVGDLAVDVTDAMLQETFASRYSSVKGAKVVFDSNTGRSKGYGFVRFGDENERSRAMTEMNGFYCSSRPMRVGVATPKKSYGYQQQYSSQAVVLANGHSSNGATNQGTQPEGDLSNTTIFVGGLDSDVSDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHHGGHGYAMRQNQDNSMNVAAAVQGAS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1751 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Dere10g1751 421 MobiDBLite consensus disorder prediction 61 92 - -
Dere10g1751 421 Gene3D - 288 413 IPR012677 -
Dere10g1751 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Dere10g1751 421 SUPERFAMILY RNA-binding domain, RBD 297 401 IPR035979 GO:0003676
Dere10g1751 421 Gene3D - 183 287 IPR012677 -
Dere10g1751 421 FunFam Polyadenylate-binding protein RBP47B 96 176 - -
Dere10g1751 421 FunFam Polyadenylate-binding protein RBP47 291 409 - -
Dere10g1751 421 SMART rrm1_1 191 265 IPR000504 GO:0003723
Dere10g1751 421 SMART rrm1_1 98 173 IPR000504 GO:0003723
Dere10g1751 421 SMART rrm1_1 310 377 IPR000504 GO:0003723
Dere10g1751 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 86 385 - -
Dere10g1751 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 374 IPR000504 GO:0003723
Dere10g1751 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Dere10g1751 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 262 IPR000504 GO:0003723
Dere10g1751 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 381 IPR000504 GO:0003723
Dere10g1751 421 CDD RRM2_SECp43_like 189 268 - -
Dere10g1751 421 CDD RRM1_SECp43_like 98 178 - -
Dere10g1751 421 Gene3D - 55 182 IPR012677 -
Dere10g1751 421 MobiDBLite consensus disorder prediction 380 400 - -
Dere10g1751 421 MobiDBLite consensus disorder prediction 1 23 - -
Dere10g1751 421 SUPERFAMILY RNA-binding domain, RBD 60 179 IPR035979 GO:0003676
Dere10g1751 421 FunFam Polyadenylate-binding protein RBP47B 178 280 - -
Dere10g1751 421 SUPERFAMILY RNA-binding domain, RBD 177 291 IPR035979 GO:0003676
Dere10g1751 421 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1751 Dere-ChrDere10 30597737 30602122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1751 98 374 Eukaryotic Initiation Factors Gene Family AT2G36660 26.596 1.65e-28 116