Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1746 ATGTCTTTAGGTCTTCTTAAACAATTTTGTGAGTTGCATTTGCCTAAGGTTGATACTTTGATTGTTTTAGAAGATGAGAGTGGAAAAGAATATGAAACAAAGTATCTTACTGATAAGGTAGGCTTAAGTGCTGGATGGAGAGGGTTTTCAATAGCTCACAATTTACTTGAGGGGGATGTTTTAGTTTTCCACTTGGTCCAACCTTCAAAATTTAAGGTGTACATTATAAGATCTTATGGGTCAAAAGAAGTGGATGTTGCTCTCAACCTTTTTAAGTTAAAAGGTTGCATGAAAGAGCAAGATTCTGAAAATGATCCAAATAGTAGCCAAATGAACAGTGATGCTAACATCCTTCCATCATATCAACCTGAAAATACCAGTGAAGAAGATGAAAAGTTTGGCTCTGAACTTTTGAATGGAATTAGATTATCAGAATCTGTGATCACTATCCAAGAAGTCACAAGTAATGAGAATTTTAGCATTATAGTGAATAGTCTAATTATTGACTCAGAACTCTCCAAACACCTTAAGACTAAGTACTATGAACTTTATTACAGCCAAATAATGTTTCTTCATGAGCATCTTCTTGAAGGTCTTAACTGTAAACTCGTCGCCAAAATAATCTCTGAGACCATTAATATTGTTGATGCCATTAGAGCCAGTAAGATCACAACCCTTGCAGATAGTTTTGCTATATGGTATAAAACTTTGAAAACCTTTAAAGCAATGGGCATGACCATTACTTTCTTGCATACTAGGCTAGACTAA 768 0.3464 MSLGLLKQFCELHLPKVDTLIVLEDESGKEYETKYLTDKVGLSAGWRGFSIAHNLLEGDVLVFHLVQPSKFKVYIIRSYGSKEVDVALNLFKLKGCMKEQDSENDPNSSQMNSDANILPSYQPENTSEEDEKFGSELLNGIRLSESVITIQEVTSNENFSIIVNSLIIDSELSKHLKTKYYELYYSQIMFLHEHLLEGLNCKLVAKIISETINIVDAIRASKITTLADSFAIWYKTLKTFKAMGMTITFLHTRLD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1746 255 Pfam B3 DNA binding domain 3 77 IPR003340 GO:0003677
Dere10g1746 255 SMART B3_2 2 79 IPR003340 GO:0003677
Dere10g1746 255 MobiDBLite consensus disorder prediction 102 124 - -
Dere10g1746 255 MobiDBLite consensus disorder prediction 99 129 - -
Dere10g1746 255 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 78 IPR044837 -
Dere10g1746 255 Gene3D - 1 79 IPR015300 -
Dere10g1746 255 CDD B3_DNA 3 77 IPR003340 GO:0003677
Dere10g1746 255 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Dere10g1746 255 SUPERFAMILY DNA-binding pseudobarrel domain 3 78 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1746 Dere-ChrDere10 30548090 30550011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1746 3 110 B3 DNA Binding Superfamily AT3G19184 43.243 1.95e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere10g1746 B3 3.1e-12 CL0405