Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1739 ATGTCCTTCCACAAGCCATTCAGACTCGCCGGACATACCTCCTCCTCCTCCTCCTCGCCACCGCCGACCCGCCTCACCCGTGAGAAAGAACTCTCCGTCATCGTCGCGGCACTCACCAATGTCGTCGTTGGCTCCACCCCGGATCCCACGCAGGAGTTCCACTTACCCCACACCTCAGTAGTACCCACCCCCATCACCGCAGGGAACATCTTCGACTCCGGCGACCACACAGTGCCAGCCGTAACGGCTGAGACCTGCCATGAATGCGGAATCACGGAGTGCTTGGGCTGCAAGTTTTTCCCGGAAGAGAACAAGAAATATGGCGAGAACATGCAGCAGAAGCAGAAGAGGGGGAAGAAGAAGTACAGGGGAGTGAGACAGAGGCCGTGGGGCAAATGGGCTGCGGAGATCCGAGACCCGAGACGGGCGACCCGGGTCTGGCTGGGGACTTTCAAGACAGCGGAGGAAGCAGCTCAAGCGTACGATAAAGCAGCCATCGAGTTCCGTGGGCCCCGCGCCAAGCTCAATTTTCCGTTCCCGGATGACTCGCTGCTGAGTTCTCCGGTGACTCAGCAACCGGAAGCATCGACAGTGGCGGACCCGGTGGCGGCGGAGCAGGGGAATAACGAGAATCCGAACCCGGGAATGGAAACGATGGCGTTTGGGGATAAGGAATGTGAGTTCTGGGATAGGATTGGAGATGCTGATTTGGAGCAGTTCATGATGGATTTCGCTGCTGGAGAGTCGTCGGGCTCTGATCCACGAACAACTCAGAGTTTGTGA 783 0.5824 MSFHKPFRLAGHTSSSSSSPPPTRLTREKELSVIVAALTNVVVGSTPDPTQEFHLPHTSVVPTPITAGNIFDSGDHTVPAVTAETCHECGITECLGCKFFPEENKKYGENMQQKQKRGKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFKTAEEAAQAYDKAAIEFRGPRAKLNFPFPDDSLLSSPVTQQPEASTVADPVAAEQGNNENPNPGMETMAFGDKECEFWDRIGDADLEQFMMDFAAGESSGSDPRTTQSL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1739 260 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Dere10g1739 260 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Dere10g1739 260 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Dere10g1739 260 MobiDBLite consensus disorder prediction 9 25 - -
Dere10g1739 260 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Dere10g1739 260 CDD AP2 122 178 IPR001471 GO:0003700|GO:0006355
Dere10g1739 260 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Dere10g1739 260 MobiDBLite consensus disorder prediction 183 215 - -
Dere10g1739 260 PANTHER DNA-BINDING DOMAIN 105 199 IPR044808 GO:0003700|GO:0009873
Dere10g1739 260 MobiDBLite consensus disorder prediction 1 26 - -
Dere10g1739 260 MobiDBLite consensus disorder prediction 183 216 - -
Dere10g1739 260 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Dere10g1739 260 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Dere10g1739 260 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1739 Dere-ChrDere10 30485336 30486118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1739 19 189 AP2-EREBP Transcription Factor Family AT4G34410 46.602 2.88e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere10g1739 AP2 4.9e-15 CL0081