Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1728 ATGGCTACCCCAAATAAATCAACACCATTGGTGTCTTCAGACTCCTTAGAACAGAAGGGAAAAAATATGGCTGAATCCAATGCCAACATGCTTCAATGTCCTTTAAGCCAGCAGCCTCGTAGCTTCTTGGATGGCCCAGTGACTATTCTTTGGGATATTGAAAATTGTCCAGTTCCAAGTGATGTTCGGCCCGAAGATGTAGCTGGCAATATAAGAATGGCTTTGAGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTTAATTCCTTCCCGAGGCGACTCAGAGAGGGCTGTCAGAGAACTGGTGTGAAACTCGTTGATGTTCCCAATGGGAGAAAGGATGCTGCTGACAAAGCTATCTTGGTAGACATGTTCTTATTTGCCCTTGACAACCCTCCCCCTTCCTCGATCATGCTGATATCTGGTGATGTTGATTTCGCTCCAGCACTTCACATCCTTGGTCAACGGGGATATACAATTATTCTTGTCATCCCTGCTGGCGTGGGTGTTTCATCTGCCCTGAGTAATGCAGGTAAATTTGTTTGGGACTGGCCGAGTGTGGCTCGTGGAGAAGGCTTTGTGCCCCCCTTAAAGGCTTTTGTGCCACCTCGTGTGGGTCCAGCTGAGGTTGCTGGATATCTGATGGGGTTCCATATTAATGACAATACTCATGGACAAAACGAAGAAGAAGCAATAATTTACAAAGGCATGTCCCAGAGCTATTATAACTCCAGGGATTTCTCAGTTGTGTCACAATCTCTGTCTGAATACAACAGTAGCACAATAAATGGGTCCTTTGTTCCGACAGCTTTGAGGTCACATAGCCTTCCATGTGGATTGAATGATGTTTCAGGAGGGCCTATGTCTTCTAGTGACCAAAATGAATGCTCATTATGGGTACAACCAGGGGATATAAATGGTCTCAAGGGCCAGTTGGTAAGGTTGCTTGAACTTTCTGGAGGTTGCCTGCCTCTGACCCGAGTTCCAGCAGAGTACCAGAAATTTTTTGGGAGGCCTCTTTATGTGTCAGAATATGGGGCATTTAAGTTAGTAAATCTGTTCAAGAAGATGGGTGACACCATAGCTGTAGAAGGGAAGGGGAATCGGAAGTTTGTATATCTTCGAAACTGGAAAGCAAGCCCAAGTGCACCTCCTTTGGCCTTGGCACAGAAAGATAAGAAAGGAAGAGGGGCTCAGGAAGAGAATGTCGATGTTGTCACTGGTGGATGCTCTTCAGATGAGTACTCAGATGAAGATAGAATAGTCATTGAAGAGCAGCTTGAGAGAAGTGGCGTAGGAAAGGGTCATCAGGGGAGGGCATCCAGATGTGACAATGATGACATTCTTGAGCAGTTCAAGCATGAACTACAGGAGATTCTAGTTAGCTACTCTTGTCGAATATTCCTAGGTTGTTTTGAAGCAATATACCAACAACGGTATAAGAAAACACTGGAATATCGGAGATTTGGTATGGAGAAGTTGGAGGATTTGCTTGACAAAGTGAGTGATGTGGTAGTGTTACTCGAAGAACCAGTAAGCAACAGAAAGTTCCTGGCTGCTGTGGATGGGTAG 1593 0.4507 MATPNKSTPLVSSDSLEQKGKNMAESNANMLQCPLSQQPRSFLDGPVTILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNSFPRRLREGCQRTGVKLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALSNAGKFVWDWPSVARGEGFVPPLKAFVPPRVGPAEVAGYLMGFHINDNTHGQNEEEAIIYKGMSQSYYNSRDFSVVSQSLSEYNSSTINGSFVPTALRSHSLPCGLNDVSGGPMSSSDQNECSLWVQPGDINGLKGQLVRLLELSGGCLPLTRVPAEYQKFFGRPLYVSEYGAFKLVNLFKKMGDTIAVEGKGNRKFVYLRNWKASPSAPPLALAQKDKKGRGAQEENVDVVTGGCSSDEYSDEDRIVIEEQLERSGVGKGHQGRASRCDNDDILEQFKHELQEILVSYSCRIFLGCFEAIYQQRYKKTLEYRRFGMEKLEDLLDKVSDVVVLLEEPVSNRKFLAAVDG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1728 530 CDD PIN_limkain_b1_N_like 46 172 - -
Dere10g1728 530 CDD LOTUS 456 518 - -
Dere10g1728 530 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Dere10g1728 530 PANTHER LIMKAIN B LKAP 24 494 IPR024768 GO:0005777|GO:0010468
Dere10g1728 530 Pfam OST-HTH/LOTUS domain 455 514 IPR025605 -
Dere10g1728 530 Pfam OST-HTH/LOTUS domain 315 379 IPR025605 -
Dere10g1728 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Dere10g1728 530 CDD LOTUS 315 381 - -
Dere10g1728 530 Pfam NYN domain 47 185 IPR021139 GO:0004540
Dere10g1728 530 Gene3D - 47 192 - -
Dere10g1728 530 MobiDBLite consensus disorder prediction 1 23 - -
Dere10g1728 530 Gene3D - 450 525 IPR041966 -
Dere10g1728 530 Gene3D - 312 380 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1728 Dere-ChrDere10 30294128 30295720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1728 42 204 C2H2 Transcription Factor Family AT5G61190 42.331 8.08e-29 119