Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1724 ATGCCTGGGAGTTTAGAGCCGTTGGATTTGGGGATTCAGATTCCATACCACTTCAGGTGTCCGATCTCGCTCGAGTTGATGCGTGACCCGGTCACCGTCTGCACGGGTCAGACCTACGACCGAGTCAGCATCGAGTCGTGGGTCGCAACCGGCAACACCACCTGTCCCGTGACTCGGGCTCCGCTCACCGACTTCACTCTTATTCCCAACCACACTCTTCGACGCCTTATCCAAGACTGGTGCGTCGCTAACCGGGCTTTCGGAATTGAGCGTATTCCCACTCCCAAACAACCCGCAGACCCAACCTTAGTTCGTTCCTTGTTGAATCAAGCCTCCTCCGAGTCAGCTACGAGTCAGTCACGCCTCTCCGCCTTGCGCCGACTCAGAGGGCTCGCTCGAGACTCGGACAAGAATCGTTCTCTCATTGGCTCTCATAACGTTCGCGAAATCCTTCTTCATATTGTTTTCTCCGATCTCGATTCCGATTCTTCCGAGTTGAACCACGAGTCACTCGCTTTACTTGTGATGTTTCCGCTCGCCGAGTCGGAATGCACGTCCGTCGCATCGGATCCGGATAAAGTCAGGTATCTATCGCGTCTTCTGTTTCACAGTTCTGTGGACGTCCGAGTCAACTCGGCCGCGCTTATCGAAATCGTCGTGGCCGGAACTCGTGCGCCGGAGCTTCGGTCTCAAATCAGCAGTATTGACGAAATCTACGACGGAGTCATCGACATTTTGAAGAATCCAATTGCGTATCCTCGCGCTCTCAAGATCGGAATCAAGGCGTTGTTTGCTCTTTGTTTGGTGAAACAGACGCGGCACAAAGCGGTTGTAGCCGGAGCACCGGAGGTCCTCATTGACCGGCTTGCCGATTTCGAGAAATGCGACGCGGAGAGGGCTCTAGCGACTATCGAACTGCTCTGTCGAATTCCAGCAGGTTGCACGGCGTTTGCTGGGCACGCGCTGACCGTGCCGCTGCTGGTGAAGATAATTCTGAAGATATCGGACCGGGCGACGGAGTACGCCGCCGGAGCCCTGCTGTCGCTGTGCTCGGAATCGGAGCAAAGCCAAAGGGAGGCGGTGGCGGCCGGAGTGCTGACTCAGCTGCTGTTGCTGGTACAGAGCGATTGCACGGAGAGAGCGAAGAGGAAAGCGCAGCTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCACGAGATTCCCTCGGAAACTCGGATGATTTTGCATGCAGCGAAGTCGTAGTAGTACCCTTATGA 1254 0.555 MPGSLEPLDLGIQIPYHFRCPISLELMRDPVTVCTGQTYDRVSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRAFGIERIPTPKQPADPTLVRSLLNQASSESATSQSRLSALRRLRGLARDSDKNRSLIGSHNVREILLHIVFSDLDSDSSELNHESLALLVMFPLAESECTSVASDPDKVRYLSRLLFHSSVDVRVNSAALIEIVVAGTRAPELRSQISSIDEIYDGVIDILKNPIAYPRALKIGIKALFALCLVKQTRHKAVVAGAPEVLIDRLADFEKCDAERALATIELLCRIPAGCTAFAGHALTVPLLVKIILKISDRATEYAAGALLSLCSESEQSQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPRDSLGNSDDFACSEVVVVPL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1724 417 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Dere10g1724 417 PANTHER WDSAM1 PROTEIN 12 398 IPR045185 GO:0061630
Dere10g1724 417 Gene3D - 316 417 IPR011989 -
Dere10g1724 417 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Dere10g1724 417 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Dere10g1724 417 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Dere10g1724 417 CDD RING-Ubox_PUB 15 67 IPR045210 -
Dere10g1724 417 Gene3D - 104 315 IPR011989 -
Dere10g1724 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Dere10g1724 417 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Dere10g1724 417 SUPERFAMILY RING/U-box 12 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1724 Dere-ChrDere10 30239654 30240907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1724 1 414 U-box Gene Family AT3G19380 69.359 0.0 568