Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1680 ATGAATCGAGATTCGGCGACAATGGAGGTGCAGCAGAGAGACGTGGATCGGGTCAAGGGTCCATGGAGCCCGGAGGAGGACGAGTTGTTGCATAAGCTCGTGCAACGGTACGGCCCTCGGAATTGGTCCGCCATAAGCAAATCGATCCCCGGCCGCTCCGGGAAGTCGTGTCGCCTGCGGTGGTGCAACCAGCTCTCGCCGGACGTGGAGCACCGGGCCTTCACGCCGGAGGAGGACGAGATCATTCTCAAGGCGCATTCACAGTACGGCAACAAGTGGGCCACCATAGCTAGGCTGCTGAACGGCCGTACGGACAACGCGATAAAAAACCATTGGAACTCGACCCTGAAGCGCAAGTACGCGTCGTTGATCGCAGACGATAGCGCCACCATAGATGAGCCGCCAGAGAAGAAATTGGCCACTGTAGATCGGCCTATGCCGATGCAGTCATTCTCATCGGGCGGCCATTGTTACAGCCCAAGTAGTCCGTCTGGATCTGACGTGAGTGATTCTGGTCTCCCTGTGGTTTCATCTTCGATGGCGATTCGTCCAATAGCGAGAACCGGCTCAATCTTGCCGCCTTACCAGCAGGTCGTCGAGTCATGCCCGAATCCAATCTTCAATTTCTGCAAGGAGCCGTGCACTGATCTCACTCTGTCCCTTCTCGGAGCCGAGTCGAACGAATCGCGGAGGATTCGAAGTTCAGGTTCTAGTACAGAGGCACCAACGCCGTCGGAGAAGTTGTCATCAATGGCGACATTTGGGCCTGATTTACTGATGGTAATGAAGGAAATGATAAGGGATGAGGTGAAAAATTACATGGCCGGGCTTGATGATAGACTGTGCTCTAATCGTGACGGTGTGAGTGCAGGAGTTTCAAAGATCAATATCATGCTAGAGGAAGAGGGAAATATCAGCGAGAGTTGAGTTGCGAATCATCGTCCACGGCGAGGTCTGTTCATGGCGACGACAGAAACGCGACAACTGTGGGTGAGGTTTTTCCTTGTAGCGACAATCTGCGATGATCGGCAACCTGATGATGTCGTTGATGGTATCTTCGCTGATCTCTCTCTGCGCTCTGCCTTCACCTATCTCGTCGTCGGTCTCTCTCTGCTCTGCCTTCGCCGGTGA 1131 0.542 MNRDSATMEVQQRDVDRVKGPWSPEEDELLHKLVQRYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPDVEHRAFTPEEDEIILKAHSQYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYASLIADDSATIDEPPEKKLATVDRPMPMQSFSSGGHCYSPSSPSGSDVSDSGLPVVSSSMAIRPIARTGSILPPYQQVVESCPNPIFNFCKEPCTDLTLSLLGAESNESRRIRSSGSSTEAPTPSEKLSSMATFGPDLLMVMKEMIRDEVKNYMAGLDDRLCSNRDGVSAGVSKINIMLEEEGNISESXVANHRPRRGLFMATTETRQLWVRFFLVATICDDRQPDDVVDGIFADLSLRSAFTYLVVGLSLLCLRR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1680 376 CDD SANT 73 116 IPR001005 -
Dere10g1680 376 MobiDBLite consensus disorder prediction 9 23 - -
Dere10g1680 376 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Dere10g1680 376 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Dere10g1680 376 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Dere10g1680 376 SMART sant 70 118 IPR001005 -
Dere10g1680 376 SMART sant 18 67 IPR001005 -
Dere10g1680 376 MobiDBLite consensus disorder prediction 150 172 - -
Dere10g1680 376 FunFam MYB transcription factor 19 70 - -
Dere10g1680 376 Gene3D - 73 119 - -
Dere10g1680 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Dere10g1680 376 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Dere10g1680 376 MobiDBLite consensus disorder prediction 228 249 - -
Dere10g1680 376 FunFam Transcription factor MYB44 73 119 - -
Dere10g1680 376 CDD SANT 21 63 IPR001005 -
Dere10g1680 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 120 IPR017930 -
Dere10g1680 376 Gene3D - 18 70 - -
Dere10g1680 376 PANTHER MYB PROTEIN-RELATED 19 227 - -
Dere10g1680 376 MobiDBLite consensus disorder prediction 1 23 - -
Dere10g1680 376 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1680 Dere-ChrDere10 29390610 29394126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1680 15 274 MYB Transcription Factor Family AT5G67300 47.552 8.42e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere10g1680 Myb_DNA-binding 1.9e-17 CL0123