Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere10g1676 | ATGGGTACCATTGAGGGAGAAAGAACTACAGTTGGATGGGCTGCAAGAGACCCATCTGGGATTCTCTCTCCCTACACTTTCGCTCTCAGAAATACCGGGCCTGACGATGTGTACATCAAGGTTCAGTACTGTGGAATCTGCCACTCTGATTTGCACCAGATTAAGAATGATCTTGGCATGTCCAATTATCCCATGGTTCCTGGGCATGAAGTGGTTGGTGAAGTGATCGAGGTGGGTCCGAACGTGACCAGATTTAAGGTCGGAGAAGTGGTCGGAGCAGGACTTCTCGTTGGGAGCTGCAGAAATTGCACGGCATGCCAATCTGAGATCGAGCAATATTGCAGCAAGAAGATCTGGAATTACAACGATGTCTATACCGATGGAAGACCCACCCAAGGTGGCTTTGCCGAAACCATGGTCGTCGATGAAAAGTTTGTGGTGAAGATACCAGAGGGACTGGCGCCAGAGCAAGTGGCTCCACTACTGTGCGCGGGCGTGACAGTGTACAGCCCACTGTCACACTTTGGGCTGAAACAGAGTGGGTTAAGAGGAGGAATATTGGGGCTGGGAGGAGTGGGACACATGGGTGTGAAGATAGCGAAAGCCATGGGTCACCATGTGACTGTAATAAGCTCTTCTGATAAGAAGAAGAAGGAGGCTCTGGAACACCTCGGAGCAGACCAGTATCTGGTTAGCTCCGACGAAGCTCAGATAAAGGAGGCTGCAGATTCACTTGATTACATCATCGACACTGTCCCTGTAGGTCACCCTCTTGAGCCTTACCTCTCCTTGCTCAAGATTGATGGCAAGTTGATCTTGATGGGTGTTATCAACACTCCTCTGCAATTCGTTAGCCCCATGGTCATGCTTGGGAGGAAGATGATAACGGGAAGCTTCATAGGAAGCATAAAGGAGACGGAGGAGATGCTAGGGTTCTGGAAAGAGAATGGTCTGAGTTCCATGATCGAAGTAGTGAAGATGGATTACATTAACAAAGCCTTGGAGAGATTGGAGAAGAACGATGTCAGATATAGGTTCGTAGTTGACGTTGCAGGCAGCAAGCTTGATGAACAACCCTGA | 1080 | 0.4917 | MGTIEGERTTVGWAARDPSGILSPYTFALRNTGPDDVYIKVQYCGICHSDLHQIKNDLGMSNYPMVPGHEVVGEVIEVGPNVTRFKVGEVVGAGLLVGSCRNCTACQSEIEQYCSKKIWNYNDVYTDGRPTQGGFAETMVVDEKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKKEALEHLGADQYLVSSDEAQIKEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVSPMVMLGRKMITGSFIGSIKETEEMLGFWKENGLSSMIEVVKMDYINKALERLEKNDVRYRFVVDVAGSKLDEQP | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere10g1676 | 359 | Pfam | Zinc-binding dehydrogenase | 191 | 312 | IPR013149 | - | |
| Dere10g1676 | 359 | Gene3D | - | 13 | 350 | - | - | |
| Dere10g1676 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 68 | 82 | IPR002328 | GO:0008270|GO:0016491 | |
| Dere10g1676 | 359 | FunFam | Putative cinnamyl alcohol dehydrogenase 6 | 321 | 350 | - | - | |
| Dere10g1676 | 359 | PANTHER | ALDEHYDE REDUCTASE | 8 | 352 | IPR047109 | GO:0016616 | |
| Dere10g1676 | 359 | CDD | CAD1 | 11 | 349 | IPR047109 | GO:0016616 | |
| Dere10g1676 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 34 | 149 | IPR013154 | - | |
| Dere10g1676 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 154 | 318 | IPR036291 | - | |
| Dere10g1676 | 359 | SMART | PKS_ER_names_mod | 20 | 348 | IPR020843 | GO:0016491 | |
| Dere10g1676 | 359 | Gene3D | - | 164 | 320 | - | - | |
| Dere10g1676 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 164 | 320 | - | - | |
| Dere10g1676 | 359 | FunFam | probable cinnamyl alcohol dehydrogenase | 13 | 170 | - | - | |
| Dere10g1676 | 359 | SUPERFAMILY | GroES-like | 16 | 181 | IPR011032 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere10g1676 | Dere-ChrDere10 | 29346844 | 29348440 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere10g1676 | 1 | 358 | Monolignol Biosynthesis Gene Families | AT3G19450 | 76.602 | 0.0 | 532 |