Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1650 ATGGCTTTGGAGGCTCTTAATTCTCCTACTACAAGCACAACCCCTTTCCCTTACAAACGGGTCCATGAAGAAGAAGAAGATGATGATGAGATTGATATTCACTGGGCTAAGGGGAAGCGCTCTAAACGACCCCGTTTCGATAGCGGCAACAACAACCCAACTTCTGAAGAAGAATACCTTGCTCTTTGCCTCATCATGCTCGCCCACAGCGACACCGCCAACACCGCCTCTGTACGGCGTCGTTCGACGGACTCATCATCTTCATCGCCGCCTAATCCTAATCCTAATCCTACGAAGCTATCTCATAGGTGTACGGTCTGCAACAAAGCCTTTCCCTCTTACCAAGCTCTTGGTGGACACAAGGCCAGCCACCGCAAGTCCTCCACGTCGGAGTCCACCGCCACGGCTGCCGACAACGCATCTACCTCCTCCGGCGCGGGCAGGATGCACGAGTGTTCCATCTGTCACAAGGCCTTCCCTACCGGCCAGGCCTTAGGGGGACATAAAAGATGTCACTACGACGGCGGCAACGGAAACAGCAGCAGCGGCGCCGCCGGCGTGACCTCTTCGGAGGGAGGGGCCGCGTCCACCCTGAGCCACCGCGGGTTTGACTTGAACCTGCCGGCTCCGTTGACGGACTTCTCGCCGGCGAGATTCGGCACGGGCGGAGATGATTCCGCGATGAAGAAGATTGCTAAGAAGAGTGTAGAGCAGGAGGTGGAAAGCCCCTTACCGGTAGTAGCCGGTAATAAGAGACCCTTCGTCGTCGATAACGCAGTACCTTCGACGACGTCGTAG 798 0.5639 MALEALNSPTTSTTPFPYKRVHEEEEDDDEIDIHWAKGKRSKRPRFDSGNNNPTSEEEYLALCLIMLAHSDTANTASVRRRSTDSSSSSPPNPNPNPTKLSHRCTVCNKAFPSYQALGGHKASHRKSSTSESTATAADNASTSSGAGRMHECSICHKAFPTGQALGGHKRCHYDGGNGNSSSGAAGVTSSEGGAASTLSHRGFDLNLPAPLTDFSPARFGTGGDDSAMKKIAKKSVEQEVESPLPVVAGNKRPFVVDNAVPSTTS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1650 265 MobiDBLite consensus disorder prediction 1 17 - -
Dere10g1650 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Dere10g1650 265 MobiDBLite consensus disorder prediction 1 54 - -
Dere10g1650 265 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 40 209 IPR044653 GO:0003700
Dere10g1650 265 Gene3D Classic Zinc Finger 100 172 - -
Dere10g1650 265 SUPERFAMILY beta-beta-alpha zinc fingers 102 172 IPR036236 -
Dere10g1650 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 172 IPR013087 -
Dere10g1650 265 MobiDBLite consensus disorder prediction 128 146 - -
Dere10g1650 265 Pfam C2H2-type zinc finger 102 126 - -
Dere10g1650 265 Pfam C2H2-type zinc finger 150 174 - -
Dere10g1650 265 MobiDBLite consensus disorder prediction 74 102 - -
Dere10g1650 265 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Dere10g1650 265 MobiDBLite consensus disorder prediction 74 89 - -
Dere10g1650 265 MobiDBLite consensus disorder prediction 118 146 - -
Dere10g1650 265 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Dere10g1650 265 MobiDBLite consensus disorder prediction 32 46 - -
Dere10g1650 265 SMART c2h2final6 102 124 IPR013087 -
Dere10g1650 265 SMART c2h2final6 150 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1650 Dere-ChrDere10 29065225 29066022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1650 1 234 C2H2 Transcription Factor Family AT1G27730 42.449 2.07e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere10g1650 zf-C2H2_6 4.9e-12 CL0361