Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1649 ATGACATCTGCCGTACCGCCGCCGGTTCCCGGCCGTGAACTCTCGAACCCTCCGTCCGACGGCATCTCGAACCTTCGGTTCTCCAACCATAGTGATCACCTGCTTGTCTCCTCATGGGATAAGAGTGTGCGATTATACGATGCGAGCGCCAATGTGCTCAGAGGAGAGTTCATGCATGGCGGACCTGTGCTTGACTGTTGCTTCCATGACGATTCTTCAGGATTTAGTGCCGGCGCCGACAATACTGTGAGGCGGCTTGTTTTCAGCTCTAATAAGGAGGATATTCTGGGAAGACATGATGCGCCTGTTCGTTGTGTTGAGTACTCCTATGCAGCAGGGCAATTGATCACTGGTAGTTGGGATAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAGGAGCGCACTCTTGTTGGGACGTACCCACAACCTGAGCGTGTTTACTCTCTTTCTCTTGTTGGGCATCGTCTAGTTGTAGCAACAGCAGGAAGACATGTTAATGTTTATGACTTGAGGAATATGTCTCAACCTGAGCAACGAAGAGAATCTTCATTAAAATATCAAACTAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCTCTTAGTTCGGTTGAAGGGCGTGTTGCAATGGAATTTTTTGATCTCTCTGAGGCTAGCCAAGCAAAAAAATATGCTTTTAAGTGTCACAGAAAATCTGAAGCTGGAAGGGACATTGTCTATCCTGTAAATGCCATTGCATTCCACCCTATATATGGGACATTTGCCACTGGAGGTTGTGACGGTTTTGTAAATGTGTGGGATGGAAACAACAAGAAGAGGCTGTACCAGTATTCAAAATATCCAACTAGCATCGCTGCACTTTCATTTAGCAGAGACGGACGCCTCCTGGCTGTTGCATCAAGTTACACATTTGAAGAGGGGCCTAAACATCAAGAACCAGATGCTATCTATGTTCGCAGCGTAAATGAGATAGAGGTCAAACCAAAACCCAAGGTCTATCCTAATCCCCCAGCATGA 1029 0.4704 MTSAVPPPVPGRELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAGADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKHQEPDAIYVRSVNEIEVKPKPKVYPNPPA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1649 342 Gene3D - 8 336 IPR015943 GO:0005515
Dere10g1649 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 280 IPR001680 GO:0005515
Dere10g1649 342 MobiDBLite consensus disorder prediction 1 20 - -
Dere10g1649 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Dere10g1649 342 PANTHER MRNA EXPORT FACTOR AND BUB3 12 328 - -
Dere10g1649 342 Pfam WD domain, G-beta repeat 96 128 IPR001680 GO:0005515
Dere10g1649 342 Pfam WD domain, G-beta repeat 20 47 IPR001680 GO:0005515
Dere10g1649 342 Pfam WD domain, G-beta repeat 230 271 IPR001680 GO:0005515
Dere10g1649 342 FunFam Mitotic checkpoint protein bub3, putative 8 335 - -
Dere10g1649 342 SUPERFAMILY WD40 repeat-like 17 305 IPR036322 GO:0005515
Dere10g1649 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Dere10g1649 342 SMART WD40_4 223 271 IPR001680 GO:0005515
Dere10g1649 342 SMART WD40_4 89 128 IPR001680 GO:0005515
Dere10g1649 342 SMART WD40_4 7 47 IPR001680 GO:0005515
Dere10g1649 342 SMART WD40_4 136 172 IPR001680 GO:0005515
Dere10g1649 342 SMART WD40_4 50 87 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1649 Dere-ChrDere10 29056364 29060322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1649 96 304 U-box Gene Family AT2G33340 24.883 5.71e-07 49.3