Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1641 ATGGGCAGAACAGAAGATCAAGAACAAACACAGTCATCATCTTCTTCAATCGATAGCAGCAACTTCCCTTGCGCAAGTTTCTGCAGAAACAGCAGCAGCATCAACACAACGGACTTGAGCACTGATCTCACACTTGGCCTTACCATCTTTCCTTCTCAACCTCACTCATCTTCTTCATCCAGTTTCACCTTAAGGACTTGGCCACCAATCAAATCCACTTTAAAGAGGAACCTAGTTGAGAAGCCAAGGCCCTCTTTATATGTGAAAGTGTACATGGAAGGCAGCGCAATCGGTAGAAAACTGAACCTGTTAGCACACCATAGTTATGATGGACTCGCAAAAGCTCTTGGCCATATGTTCAGGACCATCATTATTCTCTGTCCTAATTCTCAACCACTTCTTCGTTCTGGGAATTTTCATGTGTTAACTAGTGAGGATCAAGAAGGAGACTGGATGATGGTTGGAGATGTGCCCTGGGAGTTGTTCTTGAAAAGTGGAGTGAAGAGGCTGAAGATTACAAGAGCAGACAAATGCTAA 537 0.4395 MGRTEDQEQTQSSSSSIDSSNFPCASFCRNSSSINTTDLSTDLTLGLTIFPSQPHSSSSSSFTLRTWPPIKSTLKRNLVEKPRPSLYVKVYMEGSAIGRKLNLLAHHSYDGLAKALGHMFRTIIILCPNSQPLLRSGNFHVLTSEDQEGDWMMVGDVPWELFLKSGVKRLKITRADKC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1641 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 40 176 IPR003311 GO:0005634|GO:0006355
Dere10g1641 178 SUPERFAMILY CAD & PB1 domains 83 165 - -
Dere10g1641 178 ProSiteProfiles PB1 domain profile. 85 175 IPR000270 GO:0005515
Dere10g1641 178 MobiDBLite consensus disorder prediction 1 20 - -
Dere10g1641 178 Pfam AUX/IAA family 81 174 IPR033389 -
Dere10g1641 178 Gene3D - 80 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1641 Dere-ChrDere10 28987873 28989150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1641 88 178 B3 DNA Binding Superfamily AT2G46530 37.363 3.15e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere10g1641 AUX_IAA 1.4e-26 CL0072