Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere10g1631 | ATGGCCAGTTTCTCAGGAACCACACAGAAGTGCATGGCCTGCGACAAAACCGCCTACCTCGTCGATAGGCTAACCGCCGATGGCCGTATCTTCCATAAGGCTTGCTTCCGATGCCACCATTGCCGGAATACCCTTAAGCTCAGCAACTACTGTTCTTTTGAGGGGGTGCTATACTGCAGACCCCATTATGATCAACTCTTCAAGCGAACTGGTAGCCTCGAAAAGAGCTTTGAAGGAGCACCCAAGATTCAGAAACCAGAAAGACAAACTGAGAATGAGAATACTAAGATTCTCTCAAATGTGTTCTTGGGAACCAAAGACAAATGTGCGGGCTGTCAAAAGACAGTTTATCCTACTGAGAGGGTTACAGTTAATGGGACTCCCTACCACAAGGGCTGCTTCAAGTGCAGCCATGGAGGTTGCACAATAAGCTCAGCAAACTTCATTACACATGAGGGAAAGCTATATTGCAAGCACCATCACATTCAACTCTTCAAAGAGAAAGGGAACTATAGCCAGCTTGATGGTGAAGGCAAAGCTTTGAAAGTTGGTTTGCCCATTAAACAGGATTTGCAAAGGGAAAATGAGGAAGGCGATGAATCTCTAGAAGGAGTGGCACAACTTTATGAAGAGCAAGGTCGCGATGATGGCTGTATCCACAGCGATCGGGAGCATGTTGTTGTTAACGCAACGTGTCAAACAGAAACTTCGTTGGTTTTGGAGGATTCTTTAACTAGTCAACAAAATACTTCTTGTTCATCTTCTCCTGCATGTGTTTCTGAATCTAATGTTGAACAGCTTGCAGAGGATGCATGTGGTAGTGGTGATCCCAGTCATGGCATTCTCACGTCAAGTACTAAGGAGTCTGAAGTTCCAAAGGAAAATGTTACTGAATCAGGTCACTCAGGGAGTGAGAGGGAGAATCGAGACCCACAAACTGTGCTTGATAAGCTAAATTTCCAGTTGTTAGATAAATCTGGAAGAGAGATGAAAATACAAGTGACATATAGGACTTATGAGAGAAAAAAGAAGAGAGCTCAAAAGGATTCACGGAAGCTGGCTACTTCAGTCAACTATCGAGGTGGTAAAGAAAGAGATGACAAGTTTGTTAAGTCATGA | 1119 | 0.4406 | MASFSGTTQKCMACDKTAYLVDRLTADGRIFHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLEKSFEGAPKIQKPERQTENENTKILSNVFLGTKDKCAGCQKTVYPTERVTVNGTPYHKGCFKCSHGGCTISSANFITHEGKLYCKHHHIQLFKEKGNYSQLDGEGKALKVGLPIKQDLQRENEEGDESLEGVAQLYEEQGRDDGCIHSDREHVVVNATCQTETSLVLEDSLTSQQNTSCSSSPACVSESNVEQLAEDACGSGDPSHGILTSSTKESEVPKENVTESGHSGSERENRDPQTVLDKLNFQLLDKSGREMKIQVTYRTYERKKKRAQKDSRKLATSVNYRGGKERDDKFVKS | 372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere10g1631 | 372 | MobiDBLite | consensus disorder prediction | 269 | 314 | - | - | |
| Dere10g1631 | 372 | CDD | LIM1_SF3 | 7 | 69 | - | - | |
| Dere10g1631 | 372 | SMART | lim_4 | 108 | 160 | IPR001781 | - | |
| Dere10g1631 | 372 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Dere10g1631 | 372 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Dere10g1631 | 372 | MobiDBLite | consensus disorder prediction | 291 | 313 | - | - | |
| Dere10g1631 | 372 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - | |
| Dere10g1631 | 372 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
| Dere10g1631 | 372 | MobiDBLite | consensus disorder prediction | 339 | 372 | - | - | |
| Dere10g1631 | 372 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Dere10g1631 | 372 | PANTHER | OS06G0237300 PROTEIN | 4 | 94 | - | - | |
| Dere10g1631 | 372 | FunFam | LIM domain and actin-binding 1 | 103 | 173 | - | - | |
| Dere10g1631 | 372 | Gene3D | Cysteine Rich Protein | 6 | 75 | - | - | |
| Dere10g1631 | 372 | Gene3D | Cysteine Rich Protein | 104 | 173 | - | - | |
| Dere10g1631 | 372 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Dere10g1631 | 372 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - | |
| Dere10g1631 | 372 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 36 | - | - | |
| Dere10g1631 | 372 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
| Dere10g1631 | 372 | Pfam | LIM domain | 109 | 164 | IPR001781 | - | |
| Dere10g1631 | 372 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 174 | - | - | |
| Dere10g1631 | 372 | MobiDBLite | consensus disorder prediction | 358 | 372 | - | - | |
| Dere10g1631 | 372 | CDD | LIM2_SF3 | 109 | 169 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere10g1631 | Dere-ChrDere10 | 28912843 | 28916252 | Dispersed/Wgd |
Transcription factors information