Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1620 ATGTGGTTCCTCTTCTTCCTGCTTCTTCTCATCACCTCCAACACTGCCTCGTCTCAACTGGTTGAGACCCTACCTGGCTTCCCAGGCAAACTTCCTTTCAAACTTGAAACTGGGTATGTGGGTGTTGGGGACTCAGAGGCGGTGCAACTATTTTACTACTTCACTGAATCTGAGAGGGAGCCAGATGAAGATCCTCTCGTGCTTTGGCTCACCGGTGGGCCTGGTTGTTCTGCTTTCTCTGGCCTTGTCTATGAAGTCGGTCCCTTGTCATTTGATTATGCAGAGTCTAGTAGTGGCAGAGAGAGGTTGCCAACGCTGAAATTGAATCCATACTCATGGACAAAGGTATCTAACATGATATTCGTAGATGCCCCGGTTGGTACTGGATTCTCGTATGCAACAAACTCGGAGGCATATGAAGTCAATGACACGACATCAGCTACACAAACTTATGAATTTCTGAGGAAGTGGCTGTTGTCTCATCCCCGGTTTCTTAAAAATCCCCTGTTCGTCGCTGGTGATTCATATTCAGGCATCGTTCTCCCTATAGTTGTCAAGAAGATATCTGATGGTAATGACGCTGGACTCACGCCTCAGATGAACCTAAAGGGTTATTCGCTAGGGAACCCAGTTACAGATATACCTGTTGATAAGAATTGGAGAATTGTCTTTGCTCATAGAATAGGGCTTATATCAGATAAACTTTACGAGTCAACCAAAAGGCATTGCCATGGAGAATACGTAGATGTAGCTCCAAGCAACGCTGCATGTTTTGAGAATCTTGAAATTGTGTCGGAGTGCCTTAGGGTGATATTGACTGCGCAAGTATTAGAGCCTGACTGTGTTCCGGATACCCCAAAACCAAAGTTGTGGGCCCAGCGAAAATTATCCAAGTGGGAACCTAGTATTTTCAGAGTGGATTCTTTGGAGCAACTTTCTGCTCTTAAGCAGCATTCTGGACCATGGTGTCGGGAGTATAACTATGTCTACTCTTACATCTGGGCTAATGATGAAACCGTCCAGACTGCCCTCCACATTCGGAAGGGAACGAAGACGGAGTGGTCCAGATGCAATGAGACCTTAGCTTACACTTATGACGTCCAGTGTAGTGTACCGTACCACAGAAACCTAACGAAGAAAGGCTACACAGTTCTGATTTATAGTGGAGACCATGACATGGTTATCCCATATTTGGGTACACAGGCATGGATAAAGTCTTTAAACTTGACTGAAAGCAGCAAGTGGAAACCATGGTATGTAGAAACACAAGTCGCAGGATATACCATTGCGTATACATACAACAATTACAGCTTAGTATATGCAACAGTGAAGGGAGCAGGTCATACAGCACCTGAGTACAATCCTAAGCAATGCTTGGCTATGTTTTCTAGGTTTCTTGCTCGTTCTCCTCTCTAA 1416 0.4499 MWFLFFLLLLITSNTASSQLVETLPGFPGKLPFKLETGYVGVGDSEAVQLFYYFTESEREPDEDPLVLWLTGGPGCSAFSGLVYEVGPLSFDYAESSSGRERLPTLKLNPYSWTKVSNMIFVDAPVGTGFSYATNSEAYEVNDTTSATQTYEFLRKWLLSHPRFLKNPLFVAGDSYSGIVLPIVVKKISDGNDAGLTPQMNLKGYSLGNPVTDIPVDKNWRIVFAHRIGLISDKLYESTKRHCHGEYVDVAPSNAACFENLEIVSECLRVILTAQVLEPDCVPDTPKPKLWAQRKLSKWEPSIFRVDSLEQLSALKQHSGPWCREYNYVYSYIWANDETVQTALHIRKGTKTEWSRCNETLAYTYDVQCSVPYHRNLTKKGYTVLIYSGDHDMVIPYLGTQAWIKSLNLTESSKWKPWYVETQVAGYTIAYTYNNYSLVYATVKGAGHTAPEYNPKQCLAMFSRFLARSPL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1620 471 Pfam Serine carboxypeptidase 25 467 IPR001563 GO:0004185|GO:0006508
Dere10g1620 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Dere10g1620 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Dere10g1620 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Dere10g1620 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Dere10g1620 471 FunFam Carboxypeptidase 322 470 - -
Dere10g1620 471 SUPERFAMILY alpha/beta-Hydrolases 21 470 IPR029058 -
Dere10g1620 471 Gene3D alpha/beta hydrolase 18 470 IPR029058 -
Dere10g1620 471 FunFam Serine carboxypeptidase-like 19 14 287 - -
Dere10g1620 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 20 455 IPR001563 GO:0004185|GO:0006508
Dere10g1620 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 438 455 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1620 Dere-ChrDere10 28757916 28764510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1620 334 471 Calmodulin-binding Proteins AT2G22960 51.449 7.63e-44 150