Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1609 ATGCTGTACGACATACATACATGTTGTGCAGCAGGAGATCCTGATTCCAAAATGTTGGCCGTGTCGACGTCGACCTCGAGGAGGAGCAAGGGTCGTCAAAAGATTGAGATGAAGAAGATGAGCAACGAGAGCAACCTTCAGGTGACTTTCTCAAAGCGTCGCACTGGTCTTTTCAAGAAGGCCAGTGAACTTTGCACCCTCTGCGGCGCCGAGGTTGCTCTCATCGTCTTCTCGCCCGGCGAGAAGGTCTTTTCTTTTGGCCATCCCAACGTGGACGCCGTCGTGGATCGCTACCTCATGCGAGCCCCGCCGCCGCAGACCTCCAGCACCATGCAGCTCATCGAGGCTCACCGCAACGCCAACGTCAGCGAGCTCAACGCACAGTTCACCCAAATCTCTGCCCAGCTCGACAGCGAGAAGAAGCGCAGGTGCTCTGGAGGAGCTAAAGAGAGTGTGATCAGGCAGGCTGATAGGATGATCCTGTTTCAGAATGCTAGCTCAAATCAGTTTTTCGTCGGCAGTTCCTCTTCCAACGCAGTGGCGCCGCCGCCTCAAGTGTTTCAGTCGCCACCGTCGGTAGTGCAGAATCCCGGGTTTGACGGGAGCATAATGCCACCACACCACGGTTTCAGCAACATGGGAGGATGTGGAGGACCAGGGTTTTACTGA 669 0.5546 MLYDIHTCCAAGDPDSKMLAVSTSTSRRSKGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGEKVFSFGHPNVDAVVDRYLMRAPPPQTSSTMQLIEAHRNANVSELNAQFTQISAQLDSEKKRRCSGGAKESVIRQADRMILFQNASSNQFFVGSSSSNAVAPPPQVFQSPPSVVQNPGFDGSIMPPHHGFSNMGGCGGPGFY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1609 222 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Dere10g1609 222 CDD MADS_MEF2_like 31 99 IPR033896 GO:0000977|GO:0045944
Dere10g1609 222 FunFam Agamous-like MADS-box protein AGL62 42 108 - -
Dere10g1609 222 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Dere10g1609 222 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Dere10g1609 222 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Dere10g1609 222 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Dere10g1609 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 86 IPR002100 GO:0003677|GO:0046983
Dere10g1609 222 Gene3D - 42 123 IPR036879 GO:0003677|GO:0046983
Dere10g1609 222 PANTHER MADS BOX PROTEIN 32 142 - -
Dere10g1609 222 Coils Coil 122 142 - -
Dere10g1609 222 SUPERFAMILY SRF-like 31 116 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1609 Dere-ChrDere10 28552260 28556711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1609 27 142 Type I MADS-box Gene Family AT5G60440 68.376 5.18e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere10g1609 SRF-TF 8.3e-25 No_clan