Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1607 ATGTCGACGTCGACCTCGAGGAGGAGCAAGGGTCGCCAAAAGATTGAGATGAAGAAGATGAGCAACGAGTGCAACCTGCAGGTGACTTTCTCGAAGCGTCGCACTGGTCTTTTCAAGAAGGCCAGTGAGCTTTGCACCCTCTGCGGCGCCGAGGTTGCTCTCATCGTCTTCTCGCCCGGTGAGAAGGTCTTTTCTTTTGGCCACCCTAACGTGGACGTCGTCGTGGATCGCTTCCTCACGCGAGCCCCGCCGCCGCAGACCTCCGGCACCATGCAGCTCATCGAGGCTCACCGCAACGCCAACGTCCGCGAGCTCAACGCACAGTTCACCCAAATCTCTGCCCAGCTCGACAGCGAGAAGATGCGCAGTGAGGAGTTGAATATTATGCGAAGGGCCACCCAGGGTCAGTGCTGGTGGGCAGCTCCAATAGATGAGATGACAAGGCCACAACTTGAGCTGTTCAAGGGTGCTCTAGAGGAGCTAAAGAGGAGTGTGATCAGGCAGGCTGATAGGATGATCCTGTTTCAGAATGCTACTAGCTCAAATCAGTTTTTTCTTGGCAGTTCCTCTTCCAATGCAGTGGCGCCGCCTCAAGTGTTTCAATCGCCACCGTCGATAGTTCAGAATCCTGGGTTTAACAGGAGCATAATCCCACCACACCATGGGTTCAGCAACATGGGAGGATATGGAGGACCAGGGTTTTACTGA 708 0.5466 MSTSTSRRSKGRQKIEMKKMSNECNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGEKVFSFGHPNVDVVVDRFLTRAPPPQTSGTMQLIEAHRNANVRELNAQFTQISAQLDSEKMRSEELNIMRRATQGQCWWAAPIDEMTRPQLELFKGALEELKRSVIRQADRMILFQNATSSNQFFLGSSSSNAVAPPQVFQSPPSIVQNPGFNRSIIPPHHGFSNMGGYGGPGFY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1607 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Dere10g1607 235 FunFam Agamous-like MADS-box protein AGL62 22 88 - -
Dere10g1607 235 PANTHER MADS BOX PROTEIN 12 167 - -
Dere10g1607 235 CDD MADS_MEF2_like 11 80 IPR033896 GO:0000977|GO:0045944
Dere10g1607 235 Gene3D - 90 183 - -
Dere10g1607 235 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Dere10g1607 235 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Dere10g1607 235 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Dere10g1607 235 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Dere10g1607 235 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Dere10g1607 235 SUPERFAMILY SRF-like 11 96 IPR036879 GO:0003677|GO:0046983
Dere10g1607 235 Gene3D - 22 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1607 Dere-ChrDere10 28507682 28508623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1607 7 193 Type I MADS-box Gene Family AT5G60440 58.730 8.74e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere10g1607 SRF-TF 5.3e-24 No_clan