Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1606 ATGGATTTCATAAAGCAAACCAAGAAAGCCACAACGACAGGTCGCAAGAAAATCGAGATAAAGGAGATAGACAAGGAGGCCAACAAGCAAGTGACCTTCTCAAAACGACGGGCCGGCCTGTTCAAGAAAGCCAGTGAGCTCTGCGTTTTGTGCAACGCTCAGCTCGCCATGATCGTGTTCTCGCCAGCCGACAAAGTATTCTGCTTCGGCCAACCCAGCGTTGACGCCGTCCTCCGCCGCTACCTCCAAGGAGGAACTGCAGAGCCTGAGCCCGTCACGGCGGCGAGCGAGATGGGTTCGGTGTCCTTCGAGGAACTAAATAGGCAACACGAGGAGGCGGTGAAGGCGTTGGATAAGGAGAAGCAGAAATTGGAGGAGATTGAAAATTTAGCAAAGGTATGGAACAGAGGGAACTGGTGGGAAGAGCCCATTGATGAGATGGATTTGGAACAGTTAGAGCAATATGTGGTGGCTATGCAGGAGTTAAGGAGGAAGGTGGGAGAGAGGGCTGATGAGTTGATGATGAGGGCCATGATGGCTCCTACGGCGTCGTTTTATGGGGAAAGTTCATTGGGTGGTCTTCTTAGGGGAGGTAGTTATGGTGGTTTTGCCAACCAGTATGGTGGCGATCTCGTTGGAGATCAGAGAATGTTTGAATTTTAA 663 0.5098 MDFIKQTKKATTTGRKKIEIKEIDKEANKQVTFSKRRAGLFKKASELCVLCNAQLAMIVFSPADKVFCFGQPSVDAVLRRYLQGGTAEPEPVTAASEMGSVSFEELNRQHEEAVKALDKEKQKLEEIENLAKVWNRGNWWEEPIDEMDLEQLEQYVVAMQELRRKVGERADELMMRAMMAPTASFYGESSLGGLLRGGSYGGFANQYGGDLVGDQRMFEF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1606 220 CDD MADS_MEF2_like 14 84 IPR033896 GO:0000977|GO:0045944
Dere10g1606 220 Gene3D - 26 91 IPR036879 GO:0003677|GO:0046983
Dere10g1606 220 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Dere10g1606 220 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Dere10g1606 220 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Dere10g1606 220 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Dere10g1606 220 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
Dere10g1606 220 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Dere10g1606 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Dere10g1606 220 PANTHER MADS BOX PROTEIN 15 168 - -
Dere10g1606 220 Coils Coil 103 137 - -
Dere10g1606 220 FunFam Agamous-like MADS-box protein AGL62 25 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1606 Dere-ChrDere10 28498738 28499400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1606 12 219 Type I MADS-box Gene Family AT5G60440 37.559 2.36e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere10g1606 SRF-TF 2.2e-22 No_clan